Lotus japonicus: 130729036
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Entry
130729036 CDS
T04348
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
lja
Lotus japonicus
Pathway
lja04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130729036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lja04131
]
130729036
Membrane trafficking [BR:
lja04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130729036
Hops complex
130729036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_C
Clathrin
TPR_Vps41
zf-C3H2C3
Beta-prop_EML
EIF3I
zf-C3HC4_2
zf_RING_Vps8_fungal
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
130729036
NCBI-ProteinID:
XP_057436636
LinkDB
All DBs
Position
1:108748085..108757973
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AA seq
966 aa
AA seq
DB search
MYQWRKFEFFEDKYAAKCVVPEDDDDHDVKNEEKKKKIECCSSGRGKVVTGFDDGTVCLF
DRGLKFNYAFQPHSSSVLFLQQLKQRNFLVTIGEDEQLTPQNSALCLKVFDLDKMQSESS
STASPDCVGILRIFTNQFPEAQITSFLVLEEVPPILLIAIGLDNGAIYCIKGDIARERIT
RFKLQVENHSDKTLSSITGLGFKVDGQSLQLFAVTPSSVSLFSLHDQPPRRQTLDQIGCG
LNSVAMSDRSELIIGRPEAVYFYEVDGRGPCWAFEGEKKLLGWFRGYLLCVIVDQRTGKH
TFNIYDLKNRLIAHSVLVKEVSHMLYEWGNIILIMTDKSALCIGEKDMESKLDMLFKKNL
YTVAINIVQTQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYIHTIGHLEPSYVIQKFLD
AQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNLFIKSEDSIGELKFDVET
AIRVCRAANYHEHAMYVAKKAGRHEWYLKILLEDLGRYEEALGYISGLESSQAGMTIKEY
GKTLIEHMPVETIQILIRLCTEDGDKRPHSNGLYVSMLPSPVDFLSIFVHHPQSLMEFLE
KYTNKVKDSPAQVEINNTLLELYISNELNFPSISQVNEGGGYLNGASSKSMNLRAQPNGS
LADDKSSEEEKVRFQRREKGLRMLKSAWPPETEHPLYDVDLAIILCEMNAFRDGLMYLYE
KMKLYKEVIACYMQSHDHEGLIACCKRLGDSVKGGDPSLWADLLKYFGELGEDCSKEVKE
VLTYIERDDILPPIVVLQTLSRNPCLTLSVIKDYIARKLEQESKMIEEDRHAIEKYQEDT
LAMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPE
YRSVLEMKRNLEQNSKDQDRFFQQVKNSKDGFSVIAEYFGKGIISKTSDGSTSGLRSGSA
SSSSGF
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgtatcagtggaggaagttcgagttctttgaggacaagtacgctgcgaaatgcgtggtt
cccgaggatgatgatgatcatgatgtgaagaacgaggagaagaagaagaagatcgagtgc
tgttccagcggcaggggcaaggtggtgactggttttgatgacggtaccgtttgcttgttc
gatcgaggacttaagttcaattacgcttttcaacctcactcatcgtctgttctctttctt
cagcagctcaagcaacgcaactttctggtaactattggggaagatgaacagcttactcct
cagaattcagctttgtgcctgaaggtttttgacctggataagatgcaatctgaaagttct
agcacggcgagtcctgattgtgttgggatattgcgtatattcactaatcagtttcctgaa
gcacagattacatcttttttagtcttagaagaagtgccgcctatactactcatagctatt
ggcttagacaatggcgctatttattgtataaaaggagacattgcacgggagcgtatcacc
cgttttaagcttcaggtggaaaaccattcagacaaaactctttcctctatcactggtctt
gggtttaaggtggatggccaatctctccagttgtttgctgttactccaagttcagttagc
ttgttctcattgcatgatcaaccaccaagaaggcaaacccttgatcagattggatgtggt
ctaaacagtgttgcaatgagtgaccgctctgagttgataattggtcgaccagaggcggta
tatttttatgaagtcgatgggcgtggtccttgttgggcttttgaaggagaaaagaaattg
ctagggtggtttcgtggataccttttgtgtgttattgtagatcaaagaacaggaaaacat
actttcaacatctatgacctgaagaatcgtttaatagcccacagtgtgttggtcaaagaa
gtttctcatatgctctatgaatggggtaacattatactcattatgactgacaagtcagct
ttatgtattggtgaaaaagatatggaaagcaagttagacatgctattcaagaaaaaccta
tacactgtggcaattaatattgttcaaactcaacaagcagatgctgcagccactgctgaa
gtgcttagaaaatatggagatcatctgtatagcaagcaagactatgatgaggcaatggct
cagtacatacatactattggtcaccttgaaccttcttatgtgattcagaagtttctggat
gctcaaagaatctacaacctcacaaattacttggaaaagctacatgagaagggtcttgct
tctaaagatcacaccacacttctattaaactgttacaccaaattaaaagatgttgaaaag
ttaaatctatttattaaaagcgaagatagcattggggaacttaagtttgatgtcgaaaca
gcaatcagggtttgtcgcgctgccaattaccatgagcatgcaatgtatgtcgcaaagaag
gctgggaggcatgaatggtacttgaagatcttgcttgaagatcttggtagatatgaagag
gccttgggatatatttctggtcttgaatcaagtcaggcagggatgacaataaaggagtat
ggtaaaactctaatagagcacatgccagtggagacaattcaaattctcataaggctttgc
acagaggatggtgacaaaagaccacactcaaatggtttgtatgtgtctatgttgccatct
cctgttgattttcttagcatctttgtccatcatcctcagtctcttatggaatttcttgag
aaatataccaataaggtcaaggactcacctgctcaagtggagattaacaataccctttta
gagttgtatatatccaatgaattgaactttccttcaatatcacaagttaatgaaggtgga
ggttaccttaatggagcatcttcaaaatccatgaatttaagagcgcagcccaatggctcg
cttgcagatgacaagagttcagaagaggaaaaggtccggtttcaaaggcgtgaaaaggga
ctgcgcatgcttaagagtgcatggcctccagagacggaacatccactttatgatgttgat
ttagctattatattatgtgaaatgaatgcattcagagatgggcttatgtatttgtatgaa
aagatgaaactctataaagaagtgattgcttgctatatgcagtcacatgaccatgaaggg
ttaattgcatgctgcaaaagattgggtgattcagttaaaggaggggatccgtctctttgg
gctgatctacttaaatattttggcgagcttggagaagattgctccaaagaagtaaaagaa
gttttgacttacattgagagggatgatatcttgccccccatagttgtccttcaaactctt
tccagaaatccatgcctcacactttctgtgatcaaggattacattgcacggaaacttgag
caggaatcaaagatgatcgaggaggacagacatgctattgagaaatatcaggaagataca
ctggcaatgagaaaagagattcaagatctgagaacaaatgctagaatttttcagcttagc
aaatgcactgcatgcactttcacccttgatctgcctgctgtgcacttcatgtgcatgcac
tcattccatttgcgctgtcttggcgataatgaaaaagaatgccctgagtgtgcccctgaa
tataggtctgttttagaaatgaagagaaacttagaacagaattctaaggatcaggacagg
ttttttcagcaagttaaaaactctaaagacgggttctctgtcattgccgaatatttcggg
aaagggatcatcagcaaaacaagtgatgggtccacttctggtctcagatctggaagtgca
tcatccagcagtggcttctga
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