Lotus japonicus: 130729479
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Entry
130729479 CDS
T04348
Name
(RefSeq) nuclear pore complex protein NUP62
KO
K14306
nuclear pore complex protein Nup62
Organism
lja
Lotus japonicus
Pathway
lja03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130729479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130729479
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
130729479
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
FapA
AAA_23
Motif
Other DBs
NCBI-GeneID:
130729479
NCBI-ProteinID:
XP_057437236
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Position
1:114447557..114456219
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AA seq
620 aa
AA seq
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MSGFAFGSSSSSTSSSSSSSSSSPFSLSNPSSASPFSFGSSSLFSSTTTNPTASSAPFSF
SSSASSAPSFSFGSTPSLFTSSSASAAPPSTAPSIFGAAAATSASTTPLFGGASSASTAP
LFGGTSSSTTLFGGTPSATTPFASFGVSSSSSSSAATTTTSLFSNAFATGASPLGSSSSA
AATTSLFSTAFGTGAASSSSSTTSFSAFGKPSTPATSVTATTSSSTSGFSFGTPTSSASQ
PSFAFNNVASASASASASTASAASGTPASKQPGSFSFATSSAPLFSTVTTTTASTPASGV
SILSSSGPAFGAPAASTAPTTVASSAAPTAPASAPSSISTASFGSGFSFATKASSTPAVS
TVTTSAFGVSASTSTAPAISTSSTGATQTSSAVVVASTSGTTSTVSTSVAATPKLPSEIT
GKTVEEIIKEWNAELQERTGKFRKQANAIAEWDHRILRNRDVLLRLEIEVAKVVETQSNL
ERQLELIETHQQEADKALQSMEEEAERIYKDERGLLLDDEAASTRDAMYEQSELIERELE
HMTEQIKSIIQSLNSNQGGELDAADGMSPLDAVVRILNNQLTSLMWIDEKAEEFSSRIQK
LSNQGSASDRELTGPGMWMS
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtttcgcattcggatcctcttcttcttctacatcatcatcatcatcatcttca
tcttcctctccattttcactctcaaacccttcctctgcttccccattctcatttggatcc
tcctccctcttctcctccaccaccactaaccctaccgcctcctccgcccccttctccttc
tcctcctccgcttcttctgcgccctccttttccttcggctccacgccctccctcttcacc
tcctcctccgcgtccgccgctccgccgagtaccgctccctcaatcttcggtgccgccgcc
gccacctcagcttcaacgactccactgtttggaggagcctcctccgcttcaacggcgccg
ctgtttgggggaacgtcttcttcgacgacactctttggcggaacaccttctgcaacgacg
ccgtttgcgtcgtttggggtttcgtcatcttcttcttcttcagctgcaactaccaccaca
tctttgttctccaacgcatttgccactggtgcttctccgttaggttcttcttcttctgct
gcagctacaacttctttgttctcaactgcatttggtaccggtgctgcctcttcttcgagc
tcaacgacgtcgttttcagcgtttggaaagccgtctactccggctactagtgtgactgca
acgacgtcgtctagcacttcaggattctcgtttggaacccccacttcctctgcttctcaa
ccttcgttcgccttcaacaatgtggcatctgcttcggcttcagcttcagcttcaaccgct
tctgcagcttctggcacgccggcctcgaagcaaccgggttctttctctttcgccacgtct
tcagcgccgctgttctccaccgtgacgaccaccacggcttcaaccccggctagtggtgtc
tccatcctgtcatcttctgggcctgcatttggtgccccagctgcgtctactgcccctaca
actgttgcctcatctgccgcgccgacagctccagctagtgctccttcctctatttccaca
gcttccttcgggtctgggttttcctttgcgacaaaggcttcttcaacacctgcagtttcc
actgttactacttctgcatttggggtgagcgcttcaacctctaccgctcctgcaatttcc
acttccagcactggtgcaactcagacatcatctgctgttgttgtggcttccactagtgga
actacttcaactgtcagcacgtcggttgctgctacaccaaaactaccatctgaaatcact
gggaagactgtggaggagattatcaaggaatggaatgctgagttgcaagagcgaactgga
aaatttagaaaacaagctaatgctatagctgaatgggatcacaggattttgcggaatcgt
gatgttctgttgaggcttgagattgaagtggcaaaagtagttgagacacagtcaaatttg
gagcggcaattggagttgatagagactcatcagcaggaggctgataaggctttacaaagc
atggaggaagaagctgagcgtatttacaaggatgagcgaggattacttcttgatgatgaa
gctgcatctacaagagatgcaatgtatgaacagtctgaattgatagaaagggaactagag
cacatgacagaacagataaaatcaattatccaatcccttaactcaaaccagggcggagaa
ctcgatgcagctgatggaatgagtccattagatgctgtagttcgaattctaaataatcaa
ctaacttctctgatgtggattgatgaaaaggctgaagaattttcttcccgcattcagaag
ctatctaaccaaggttctgcttcagatcgtgaactgacgggtccaggaatgtggatgtcc
tga
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