Lotus japonicus: 130729852
Help
Entry
130729852 CDS
T04348
Name
(RefSeq) uncharacterized protein LOC130729852 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130729852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130729852
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130729852
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130729852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
130729852
NCBI-ProteinID:
XP_057437677
LinkDB
All DBs
Position
1:119717134..119728298
Genome browser
AA seq
888 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSESREWLNNVVGELESQIDSFEAELEGLSVKKGKNRPPRLTHLETSITRHKA
HIKKCEFILRLLDNDELSPEEVNDVKDFLDDYVERNQEDFDEFDDVDELYSSLPLDRVET
LEDLVMIPPGPVKVAPVLSLKTTLTASASQSASASASQTSEQADDAASQDSNSDIVAKTP
PPKSSGISSAPSTPAGNHTTPVSVNVAGQLPGAPAAAVLSGSISVRNILENVAVTNSSPT
HQSTPTKEEEINNFPSRRPSPSLSDAALVRGRNSLSNPATSGITLGPGSMVPNNVALGSV
PSASEITKRNILGADDRLGSSGMVQPLVSPLSNRLILPQVAKANDGMSADSSTVNEAAAV
SGRVFSPSVVPGMQWRPGSPFQNQNDAGQLRARTEIAPDQREKFLQKFQQVQQQGPSTLL
NMPSLVGGNHKQFSAQQQNPLLQQFNTQGSSVSSQSGMVLGVQSPSLSSISPASIQQPPN
SAHSPSSQQPLIPGVAKDADVGNSKVEEQQQHQNYADESTAESPSSNGIGKNLAIEDDLK
SAYAVDSPAGVSASLPESAQTSRDIDLSPGQPLQSNQPTGNLGVIGRRNGAELGAIGDSF
SGSSVNSGGVRDQLYNLQMLEAAHHKIPLAKDSERPRTYTPRHPTITPPTYPQIQAPIVN
NPAFWEKVGQEPFGTDTLFFAFYYQQNTYQQYLAARELKKQSWRYHRKYHTWFQRHEEPK
VATDEFEEGTYVYFDFHIANDDLQHGWCQRIKTGFTFEYNYLEDELVV
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtcgaaagcttcagggtgagatagatcgcgttctcaagaaggttcaagaa
ggcgttgaggtcttcgatagtatctggaacaaggtttacgatacggacaatgcaaaccag
aaggagaaatttgaggcagacctcaagaaggagattaagaagctccagaggtatagagac
caaatcaagacttggattcaatccagtgagatcaaggataagaaggttagtgcctcgtat
gagcaggctctggtggatgcgcggaagctaattgagcgagaaatggaaagatttaagatc
tgtgagaaagaaactaagaccaaagctttctccaaagaaggcttgggtcagcagcctaag
accgatccaaaagagaaagcaaaatcagagtcaagggaatggctaaacaatgtggttgga
gagttagaatctcaaattgatagctttgaagctgagcttgaagggctttctgtcaagaaa
ggaaagaacaggccacccagattgacacatctagagacatcaattactcggcacaaggct
catataaagaaatgtgaattcattttgaggctgctagacaatgatgaattaagtcctgag
gaggttaatgatgtcaaagatttcttggacgactatgtagagcgtaatcaggaggatttt
gacgagttcgatgacgttgatgaactatacagttcattgcctttagacagggtggagact
ctagaagatcttgttatgattccccctggtcctgttaaggtggcacctgttcttagcttg
aagactacattgacagcatcagcatcacaatcagcgtcagcatctgcatcacaaacttct
gagcaagctgatgacgcagcatcacaggatagcaattctgacattgttgctaaaactcca
cctcctaaaagtagtgggattagttctgctccatcaactcctgcggggaaccatactact
cctgtgtctgtgaatgttgctggtcaattgcccggtgcaccagctgctgcagtcctgtct
ggttcaatttctgttcggaatatcttggagaatgttgctgttaccaattcttcacctact
caccagtctacccctacaaaggaagaagagattaataacttccctagcagaagaccatct
ccatcgctttctgatgcagcacttgtgaggggcagaaacagcctgtcaaatccagcaact
tctggcatcactctcggtcctggaagtatggttcccaacaatgtggcccttggttcagtc
ccttcagcctcagaaataactaagaggaatatattgggagctgatgatagacttgggagt
agtggaatggtgcagcctcttgtgtccccgttaagtaatagattgatcttgcctcaggtt
gctaaggctaatgatggaatgtcagctgactctagtactgttaatgaagctgcagctgta
tcggggagagttttctccccttctgtggttcctggcatgcaatggagacctggaagtccc
tttcagaatcagaacgatgcagggcagcttcgtgcaagaactgaaattgctcctgatcag
agggaaaaatttctgcagaagttccagcaagtgcagcaacaagggcctagtacccttctt
aacatgccttctcttgttggaggaaatcacaagcagttttcagcccagcagcaaaatcca
cttctgcagcagtttaacactcaaggatcatctgtttcttctcaatccggtatggtactt
ggagtccagtccccgagtctcagtagtatttctcctgcctcaatacagcagccacccaat
tctgctcattccccatccagtcaacagccattgattccgggtgttgctaaagatgcagat
gttggcaattctaaggttgaggaacagcagcaacatcagaattatgctgatgagtcaaca
gcggaatctccttctagcaatgggattggcaagaatcttgcaattgaagatgatttgaaa
tcagcatatgctgtagattcacctgcaggagtatctgcctctcttccagaatctgctcaa
acttccagagatatagatttgtctcctggacaaccattacaatccaatcaacctactggt
aaccttggtgtcattggaagaagaaatggtgctgagcttggagccatcggtgatagtttt
agtggatcgagtgtcaattctggtggagtgcgtgatcagctatataatttacaaatgctc
gaggcagcacatcacaaaattcctctagctaaagactcagaacgtcctaggacttatact
cctaggcacccaacaattacacctcctacctatcctcaaatacaggcacctatagttaat
aatcctgccttttgggagaaagtgggacaggaaccattcggcaccgacaccttgttcttc
gcattttattatcaacagaacacataccaacaatatttggctgcaagggagctaaagaag
cagtcttggagataccaccgaaagtatcatacatggtttcagcgacatgaagaacccaaa
gttgctaccgatgaatttgaggagggaacatatgtgtactttgattttcatattgcaaat
gatgacctgcaacatggatggtgtcaaagaatcaagactggattcacttttgagtataat
tatcttgaagatgagcttgttgtatag
DBGET
integrated database retrieval system
