Lotus japonicus: 130730022
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Entry
130730022 CDS
T04348
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
lja
Lotus japonicus
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130730022
03036 Chromosome and associated proteins [BR:
lja03036
]
130730022
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
130730022
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
130730022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HHH_9
Tex_central_region
HTH_44
HHH_3
SH2
Motif
Other DBs
NCBI-GeneID:
130730022
NCBI-ProteinID:
XP_057437876
LinkDB
All DBs
Position
1:complement(121698675..121709837)
Genome browser
AA seq
1634 aa
AA seq
DB search
MAKGVISDEEDEVELDEEEREPVDGEELEGREIDDDDEDEEEEGQDEYEKDGFIVDDIDD
EEEQDEEEERAESDEERQKKKKRKKKEEYVLDEDDYALLEDNNINIPRPKVNKKFKRLKK
GQRDMEDETSGLSDDEEFDGSGKVGRTAEEKLKRSLFGDDEGAPLEDIVEEEEQGEEEED
ADIGEDDEMADFIVEEEEVDENGATVKRNRKPNRRKNRQAPGVSSSALQEAQELFGDVEE
LLEARNLNRLKDNKVTTIEDEFDPSVIADKYMTEKDDQIRELDVPERIQISEESAPPLDG
SSIDQESTWIVKQLKNGAVPWICKKVPSSQNSGKGPPIEGNDIIRFLELHHVQKLDIPFI
AMYRKEECLSLLKDLERSDAVDEDWDKNNKTPALKWHKTLWAIKDLDRKWLLLQKRKSAL
QSYYSKRFEEESRRVYDESRLNLNRKLFDSVMKSLKEAESEREIDDVDSKFNLHFPPGEA
GVDEGQFKRPKRKSLYSAYSKAGLWEVASRFGCSSEQLGLYLIDVVPHEVEDPKETPDEL
ASNFTCAIYDSSEEVLKCARHMAAVEISCEPSIKKHVRSHFLDHAVVSTVPTADGNVTID
SFHQFAGVKWLQKKPLSQFEDAQWLLIQKAEEEKLIVVTIKLPEEDLNKLLDQFNEYYIS
DSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARSILTSKAKNWVLIEYGKALWNKVSV
GPYQQKEKDLSSDDEAGPKVMACCWGPGKPQTTFLMLDSSGEVLDVLYTGSLTFRSQNVN
DQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHAMD
GLSIVYGDESLPRLYENSRISSEQLPSQQGIVRRAAALGRYLQNPLAMVATLCGPRREIL
SWKLSSFESFLNPDDKFGMIEQVMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAA
SLQRSLVRAGAIFTRKDFVKEHKLGKKVFVNAAGSLRVRRSGLALNSGQYIDLLDDTRIH
PESYAIAQELARDMLQEDVTDVNDEDEPIEHVRDRPSYLKNLDVEEYASHKGCLNKIRTL
YDIKRELIEGFEDWRKPYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGL
ESGMTGILMKEDYIDDWRDIIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNR
LQNNCELDPYYHEDQSCLQSEHDKARKQKELAKKHFKQRMIVHPRFQNSTADEAMEFLSD
KDPGESIIRPSSRGPSYLTLTLKIHDGVYAHKDIVEGGKEHKDITSLLKMGKTLKIGDDT
FEDLDEVMDRYVDPLVTHLKAMLNYRKFRKGSKAEVDELLRMEKAEYPMRIVYGFGISHE
HPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPLHDSAPSIR
SVAAMVPMRSPAAGGSSGASVGSGWGGSNSEGGWKGYSYDRDRSSTPGSRTGRADYRNNG
NRDEHPSGVPRPYGGRGRGRGSYSSSRGHNSNNERQDSGYGAGRWGPASKDGNDGLSNFP
GAKVQNSPGREAFPGGWGGSDGGSGWGGGASTGDNGGWGQGSGGDQNDAQEGSSGWGTGT
KKAGEDGWTGGGSW
NT seq
4905 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaggcgtgatatctgacgaagaagatgaggtcgaactcgacgaggaggagagg
gaacccgttgatggggaagaattggagggtcgtgagatagacgatgacgacgaggatgaa
gaagaagaagggcaggatgaatatgaaaaagatggatttatagtggatgacattgacgat
gaagaggagcaggatgaagaagaagagagagcagaaagtgatgaggagcgacagaagaag
aaaaagaggaagaaaaaggaggagtatgtccttgatgaagatgactatgcgttgctggag
gacaataatatcaatattcctcgtccgaaggtaaataaaaagttcaagcggctgaaaaag
ggccagagagatatggaggatgagacctctggactatctgatgatgaggagtttgatgga
agtggtaaagttgggcgaactgctgaggagaagcttaaacgcagtttattcggcgatgat
gaaggagctccacttgaagacattgttgaagaggaggagcaaggagaagaggaggaggat
gctgacattggagaagatgatgaaatggccgacttcattgtggaggaagaagaagttgat
gagaatggagccactgtgaagcgcaataggaagccgaacaggagaaaaaataggcaggca
ccaggtgtctcttcatcagctttacaagaagctcaagagttatttggtgatgttgaggag
ttgcttgaggctcgcaatctaaatcgattaaaggataacaaagtgactacaattgaagat
gaatttgatcctagtgttattgctgataaatatatgacagaaaaggatgaccagatcagg
gagctcgatgttccagagagaattcagatatcggaggagagtgctcctcctctggatgga
agtagtatagaccaggagagtacgtggattgtgaaacaattgaaaaatggagcagtccct
tggatttgcaagaaagttccaagctcccaaaatagtggaaagggcccaccaattgaaggg
aatgatattatccgatttttggaactacatcatgtgcaaaagttagatattccttttatt
gccatgtaccggaaggaggagtgcttaagcctattgaaagacctagagcgatctgatgct
gttgatgaggattgggataagaataacaagacacctgctctgaaatggcacaagacgctg
tgggctataaaggacttggacaggaagtggttgcttcttcagaaacggaagagtgctctc
caatcatactacagtaaacgatttgaagaggaatctcggcgtgtttatgatgagtcaaga
ctgaatttgaataggaaattgttcgactccgttatgaaatcactgaaggaggcagagtct
gagagggagattgacgatgtcgactccaagttcaatttgcattttccaccaggtgaagct
ggtgttgatgaagggcaattcaagaggccaaaaaggaagtcattgtattcagcttacagt
aaggcaggtctatgggaggttgcaagccggtttggctgtagttctgagcaacttgggttg
tatctgatagatgttgttccgcatgaggttgaagatccaaaggaaacaccagatgagtta
gcttctaacttcacatgtgcaatttatgattcctctgaagaagtacttaaatgtgctagg
cacatggcggctgttgagataagctgtgagcctagcattaagaaacatgttcgtagccac
tttcttgaccatgctgtggtgtcaactgtaccgactgctgatggaaatgtgacaattgat
tctttccatcagtttgctggggtgaagtggctgcaaaagaagcctttgtctcaatttgag
gatgcacaatggctcctaatacagaaggcagaagaggaaaaattgattgtagttacgatt
aagctgcccgaagaggatctaaataagttgctagaccaattcaatgagtattatattagt
gacagtgttagcagatctgctcaactgtggaatgagcagaggaagttgatactgcatgat
gcaatttttcgatttcttttaccatcaatggaaaaagaagcaagaagcatcttgacaagc
aaagcaaagaattgggtactcatagagtatgggaaggccttgtggaataaggtttctgtg
gggccttatcaacagaaggaaaaggatcttagctcagatgatgaggctggtcctaaggtt
atggcctgctgttggggccctggaaagccacaaacaacttttcttatgttagattcatca
ggagaagtgctagatgtgctttacactgggtcacttacttttaggtcacagaatgtaaat
gaccaacagaggaagaagaatgaccaggaacgtgtgttgaagtttatgactgatcaccaa
ccacatgtcgttgttttaggagcagttaacttgtcttgtactcgtttgaaggaagatata
tatgaggtcatttttaagatggtggaggaaaaccctagagatgttgggcatgcaatggat
gggctcagcattgtgtatggtgatgaatctcttccccgtctttatgaaaattctcgaatt
tcctctgaacagcttccttcgcagcaaggtatagtgaggcgggctgctgctcttggccgt
tatctccaaaacccattggcgatggttgcaacattatgtggacccagaagggaaatatta
tcgtggaaactgagctcttttgagagctttctcaacccagacgataaatttgggatgatt
gagcaggttatggtagatgtaaccaatcaggtcggtttggacattaatctagcaataagt
catgaatggttatttgctccattacaatttatttctgggcttggtcctcggaaggctgca
tccttgcagagatccttggtaagagctggtgcaattttcactcgaaaggactttgtgaaa
gaacataaacttggtaagaaggtgtttgtcaatgcagctggttccttgcgtgtccggaga
agtggattggctcttaacagcggccaatatattgatttgctggatgatacaagaattcat
ccagaatcttacgctattgcacaagagttagctagagatatgttacaggaagatgtcaca
gatgtaaatgatgaggatgagcccatagaacacgtgagagacagacccagttatttgaaa
aaccttgatgttgaggaatatgcatcgcataaaggatgtctgaacaaaataagaactttg
tatgatataaaaagagaactgattgaaggttttgaggattggcgtaagccatatgaagaa
ccgagtcaggatgaggagttctatatgatttcaggtgagactgaagagacacttgctgaa
gggaaaattgtccaagttacagttcgccgagtacaggcccagaaagcaatatgcgggctt
gaatctggaatgactggaatcctaatgaaagaagactatatagatgactggagagatata
attgagttatctgataggttgcatgaaggtgacatgctcacttgtaaaatcaagtcaatc
caaaagaataggtatcaagtctttcttgtttgtaaggatagcgaaatgaggagtaatcgg
ttacagaataactgcgaacttgatccctattaccatgaagaccagagctgcttacagagt
gaacatgacaaagctcggaaacaaaaggagcttgcaaagaagcatttcaagcaaaggatg
attgttcatccacgatttcagaacagtactgcagatgaagcaatggagttcttatctgac
aaagatcctggagaaagtattatccgccctagttcacgtggaccctcatatcttacctta
acacttaaaattcatgatggagtatatgcccacaaggatatagttgaaggtggtaaggaa
cacaaggacatcacaagcttacttaaaatggggaagacgctaaaaattggagatgatact
tttgaggatttagatgaggttatggaccgttatgttgatcccttggtgactcacttgaaa
gcaatgttaaactaccgtaagtttaggaagggttcaaaagcagaagttgatgaacttttg
aggatggaaaaagctgagtatcctatgcgcatagtctacggttttggcatctcccacgaa
catcctggcacatttatattaacttatataagaagtacaaatccgcaccacgagtacatt
gggctttacccaaaaggattcaggttccggaagaagatgtttgaggatattgatcggctt
gtggcatattttcagaggcatattgatgatcccttacatgattcagccccctccattaga
tccgtagctgctatggtaccaatgcgaagccctgcagctggtggttcatcaggggcatct
gtgggtagtggctggggtggttcgaacagtgagggtggctggaaaggctactcttatgat
agagatcggtcttctacccctggttccaggacaggacgggctgattacagaaacaatggg
aatcgagatgaacatcctagtggagtgcctcgtccatatggtggtcgtggacgtggtcga
ggttcttacagcagtagtagaggacacaactccaataatgaaaggcaggactctggttat
ggtgctggcagatggggtcctgcatcgaaagatgggaatgatggtttaagcaatttccca
ggggcgaaggttcaaaattcccctggaagggaagcatttcctggtggttggggtggaagt
gatggaggcagtggttggggaggtggagctagtaccggcgacaatggtggctggggacaa
gggagtggtggtgatcaaaacgatgctcaagagggaagctctggctggggaacaggcacc
aagaaagcaggtgaggatggatggactggcggtggatcttggtga
DBGET
integrated database retrieval system
