KEGG   Lotus japonicus: 130730060
Entry
130730060         CDS       T04348                                 
Name
(RefSeq) general transcription factor IIH subunit 2
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
lja  Lotus japonicus
Pathway
lja03022  Basal transcription factors
lja03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    130730060
  09124 Replication and repair
   03420 Nucleotide excision repair
    130730060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lja03021]
    130730060
   03400 DNA repair and recombination proteins [BR:lja03400]
    130730060
Transcription machinery [BR:lja03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     130730060
DNA repair and recombination proteins [BR:lja03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     130730060
SSDB
Motif
Pfam: Ssl1 C1_4 VWA_2 Zn_ribbon_GTF2H2 IBR VWA_3 RGS12_us1
Other DBs
NCBI-GeneID: 130730060
NCBI-ProteinID: XP_057437928
LinkDB
Position
1:complement(122269092..122274054)
AA seq 422 aa
MNNISGRPLNGEVEDDDEDEANGGGLEAWERTYAEDRSWESLQEDESGLLRPIDNTAIHH
AQYRRRLRALASKAATARIQKGLIRYLYIVVDLSKAAAETDFRPSRMAVIGRLVETFIRE
FFDQNPLSHVGLVTIKDGVAHCLTDLGGSPESHIKALTGKLECSGDASLQNALELVVGYL
NQIPSYGHREVLILYSALSTCDPGDLMETIQKCRKSKIRCSVIGLAAEMFICKHICQETG
GTYSVALDESHFKELVLEHAPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG
GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFDEISPSSRNDPSHSF
SNTCFGCQQSLLSQGNVPGISVTCPKCKQQFCLDCDIYIHESLHNCPGCESFRHSTSVTA
AQ
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgaataatatttctggaagaccacttaatggagaagtagaagatgatgatgaagatgaa
gctaatggtggaggccttgaagcctgggagagaacttatgctgaagatagatcatgggag
tctttgcaagaggatgaatctggacttcttcgccccatagataatacagccattcaccat
gcccagtatcgcaggcgccttcgtgcccttgcatccaaggcagctactgcacgaattcag
aagggtcttatacgatacctttacattgttgtagacctgtccaaggcagctgctgagacg
gactttcgaccaagtaggatggctgtgatagggagactggttgagacatttatcagggag
ttctttgatcagaatccacttagtcatgttggcctggttaccataaaagatggggttgct
cattgcttaacagatcttggtggcagtcctgagtcccacatcaaagctttgacgggtaaa
ctggagtgctcaggtgacgcatccctacaaaacgcactagagcttgttgttggctatcta
aatcaaatcccatcatatggtcatcgtgaagttctgatcttatactcggctctaagtaca
tgtgatcctggtgatctcatggaaaccatccagaaatgcagaaagagtaaaataaggtgc
tctgtcattggtcttgctgctgaaatgtttatatgcaaacatatctgccaagaaacagga
ggaacttattctgttgcactagatgagtcccactttaaagagttagttctagagcatgct
ccaccacctccagcaatagcagagtatgctactgctaacttaattaagatgggtttccca
caaagagcagctgagggttcagttgcaatttgtacttgtcatgaagaggctaagaccgga
gggggatacacttgtccaagatgcaaagttcgtgtctgtgagcttcctactgaatgtcgc
gtctgtggattaacccttatttcttcaccccatttggcaaggtcatatcatcatctcttt
cctatagtgccatttgatgaaatctctccatcgtctcgaaatgatccaagccacagtttc
tccaatacttgttttggttgtcaacaaagtcttcttagtcagggaaacgtgcctggaatt
tcggttacttgcccaaaatgcaaacaacaattctgccttgattgcgacatctacattcat
gagagcttacataattgcccaggctgtgagagtttcaggcattctacgtcagtaactgct
gcccaatga

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