Lotus japonicus: 130730332
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Entry
130730332 CDS
T04348
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lja
Lotus japonicus
Pathway
lja04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130730332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130730332
03009 Ribosome biogenesis [BR:
lja03009
]
130730332
04131 Membrane trafficking [BR:
lja04131
]
130730332
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lja04147
]
130730332
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
130730332
Ribosome biogenesis [BR:
lja03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
130730332
Membrane trafficking [BR:
lja04131
]
SNARE
SNARE associated proteins
Others
130730332
Autophagy
Aggrephagy
Other aggrephagy associated proteins
130730332
Exosome [BR:
lja04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
130730332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_5
AAA_2
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
Mg_chelatase
nSTAND3
AAA_28
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
Vps4_C
ABC_tran
AAA_7
Viral_helicase1
NB-ARC
AAA_24
TsaE
NACHT
AAA_lid_PRS2_C
DUF815
Zeta_toxin
Sigma54_activat
Sigma54_activ_2
Zot
Motif
Other DBs
NCBI-GeneID:
130730332
NCBI-ProteinID:
XP_057438296
LinkDB
All DBs
Position
1:125666858..125671861
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AA seq
809 aa
AA seq
DB search
MANQPESSDSKGTKRDFSTAILERKKAPNRLVVDEAVNDDNSVVALHPATMEKLQLFRGD
TILIKGKKRKDTICIALADETCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVH
ILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETEPSEYCV
VAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKISKNTHGYVGADLAALCT
EAALQCIREKMDVIDLEDEEIDAEILNSMAVTNEHFQTALGSSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPVSKDVDIRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSEN
PEAMEEDVDDEVAEIKAAHFEESMKYARRSVSDADIRKYQSFAQTLQQSRGFGSEFRFAD
STSGGGAGAGAASDPFAAAGGADEDDLYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcaacctgaatcctccgattcgaagggaacgaagagggattttagcactgcg
attctggagcggaagaaggcgccgaatcggcttgttgttgatgaggctgttaatgatgac
aactccgtcgtcgctcttcatcccgcgaccatggagaagctccagctcttccgtggcgat
accatcttgattaagggaaagaaaaggaaagatacaatctgtattgcacttgctgatgaa
acatgtgaagaaccaaaaataagaatgaacaaggttgtgagaagcaaccttagggttagg
cttggagatgttgtttcggtgcaccaatgtgctgatgtcaagtatggaaagcgcgtccac
attcttcctgtggatgacactattgaaggagtgacgggaaatctctttgatgcgtactta
aaaccttatttcttggaggcttatcgaccagtgaggaagggagacctcttccttgtaaga
gggggtatgagaagtgtagaattcaaggttattgaaactgagccttctgagtactgtgtt
gtcgccccagacacagagatcttctgtgaaggagagcctgttaaaagggaggatgagaat
cgattagatgaggttggttatgatgatgttggtggcgtgagaaagcagatggcacagatc
agggaactggtggaactgccactgaggcacccacagttattcaagtctattggtgttaag
ccaccaaaaggaatccttctgtatggaccccctggatctggcaagactttgattgctaga
gctgttgcaaatgaaactggtgctttctttttctgcatcaatggccctgagatcatgtca
aaactggctggtgagagcgagagcaacctcaggaaggctttcgaggaagcggagaagaat
gcaccctcaatcatcttcattgatgagatagattcaatagctccaaagagggagaagact
catggagaagttgagagacgcattgtttctcagctcttgacactcatggatgggcttaaa
tctcgggcccatgtaattgtcattggagccacaaatcgccccaacagcattgaccctgcc
cttaggagatttggaaggtttgatcgggagatagatattggcgtacccgatgaagtcggg
cgccttgaggttcttcgaattcatacaaagaacatgaagcttgctgaagatgttgatttg
gaaaagatttctaagaacacacatggctatgttggtgctgatctagctgcgttgtgtact
gaagctgcacttcagtgcatcagggaaaaaatggatgtgattgacttggaagatgaggaa
attgatgctgaaatattgaactctatggctgtaacaaatgaacatttccagactgctctt
ggatcaagcaatccttctgctctccgtgaaacagttgttgaagtgcccaatgtcagctgg
gaggatattggtggtcttgaaaatgttaagagggaactccaagagactgttcaatatcca
gtggaacaccctgagaagtttgagaaatttggaatgtcaccttcgaagggagttcttttc
tatggtccccctgggtgtggtaaaacactattggctaaagctattgccaatgaatgccag
gcaaacttcatcagtgtcaaaggtcctgagctactcactatgtggtttggagaaagtgag
gctaatgtgagggaaatttttgacaaggctcgtggttctgctccatgtgtcctattcttc
gatgagcttgactctattgcaactcagagaggtagtagtgttggagatgctggtggtgct
gctgacagggtgttgaaccaactgcttactgaaatggatgggatgtcagcaaagaaaact
gtgttcatcattggggccactaatcgaccagacattatagacccagctcttttgcgtcca
ggtcgtctagaccagttgatatatatccccctcccagacgaggattcgcgccatcagata
tttaaagcttgcttgagaaaatccccagtctcaaaagatgttgatattagagctcttgca
aagtacactcaaggcttcagtggtgctgatattactgagatttgccagcgtgcttgcaaa
tatgccattagagagaacattgagaaggacattgagagagagaggaggagaagcgagaac
cccgaggccatggaagaggatgttgatgatgaggtggctgaaatcaaggcagctcatttt
gaagaatcaatgaagtatgcacgaaggagtgtaagcgatgctgacattcggaagtaccag
tcatttgcccaaacattgcagcagtctagagggtttggatctgagtttaggtttgcagat
tccacctctggtggcggtgctggtgctggtgctgcatctgatccatttgcagctgctggt
ggggctgatgaagatgatctttacagttag
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