Lotus japonicus: 130730508
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Entry
130730508 CDS
T04348
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
lja
Lotus japonicus
Pathway
lja03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130730508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130730508
04121 Ubiquitin system [BR:
lja04121
]
130730508
03036 Chromosome and associated proteins [BR:
lja03036
]
130730508
03400 DNA repair and recombination proteins [BR:
lja03400
]
130730508
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
130730508
Ubiquitin system [BR:
lja04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
130730508
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
130730508
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
130730508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-HC5HC2H_2
zf-RING_5
zf-C3HC4_4
zf-RING_2
zf-C3HC4_2
zf-RING_6
PTCB-BRCT
PHD_NSD
RTT107_BRCT_5
Prok-RING_4
zf-Nse
Motif
Other DBs
NCBI-GeneID:
130730508
NCBI-ProteinID:
XP_057438516
LinkDB
All DBs
Position
1:complement(127441034..127446592)
Genome browser
AA seq
708 aa
AA seq
DB search
MEDSGKPNNKSKLMNPWMLHFQKLALELKCPLCLSLFEKPVLLPCDHLFCDSCLVDSSLS
GSECAVCKTKYAQTDIRNVPFVENMVAIYRSLDASFCASMLQQRSNDDSRVLQQCQTFRD
SSYSNIKKADNFSQSSPNSNGFGVGENRKSMITMHVKPEELEMSSGGRAGFRNDVKPYPM
QRSRVEIGDHVEMDVNQVTQAAVYSPPFCDTKGSDNDCSELDSDHPFNPEILENSSLKRA
STGKGNLKERKSQFRSESSASETDKPTRDLKRKKYLNKGDDHIQHVSTHHSKLVDSHCGL
DLKSGKEPGELLPANIPIDLNPSTSICSFCQSSETSEATGPMLHYANGKSVIGDAAMQPN
VIHVHRCCVDWAPQVYFVDETCKNLKAEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHV
PCAMDVSTCRWDQEKYLLLCPVHSNAKFPHEKSRPKKQATQEHPASAHLSSQLSNPLGAF
HDDGKKVVFCGSALSDEEKVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRTLKV
LMAILNGRWVLKIDWIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGRLSALANEPKLFS
GLKFYFSGDYVSSYKEDLEDLVEVGGGAVLTSKDKLEAKRHEFEVTSNLLIVYNLDPPQG
SKLGDEVSTLWQRLNEAEDLAANTGSQVIGHTWILESIAACKLQPFIC
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggaagattctggaaaaccgaacaacaagagcaaactcatgaatccatggatgctccac
ttccagaaactcgctctcgaactcaaatgccctctctgtttgagcttgttcgagaagcca
gtgttgctaccgtgtgaccacttgttctgcgattcctgcttggttgatagctccctttct
ggctctgaatgtgctgtttgcaaaactaagtatgctcaaacagatataagaaatgtgccg
tttgtggaaaatatggtagcgatctatagaagcttggatgcatctttttgtgctagtatg
ttgcagcaacgctctaatgatgattctagggttttgcagcaatgccagacatttcgcgat
tcaagctatagtaatattaagaaggctgataatttttcacaaagttcacccaattctaat
gggtttggggttggtgagaatcgcaaatctatgattacaatgcatgttaaaccagaggag
cttgagatgtctagtgggggaagagctggctttcgtaatgatgtaaagccttatccaatg
caacgctcccgggttgaaattggggaccatgtggaaatggatgtgaatcaagtgacacaa
gctgcagtctacagccctccattttgtgataccaaaggttcggataatgactgcagcgaa
ctagacagtgatcatccattcaatcctgagatattggaaaattcttcattgaagagagca
agcacaggaaaaggaaatttgaaagaaagaaagtctcagttcaggtctgaaagttcggca
tctgaaactgataaacctacaagagatctcaagagaaaaaaatatcttaacaaaggagat
gatcatattcaacatgtctccacacatcatagtaagcttgtggattcccactgtggtctg
gaccttaaatctggaaaggagccgggtgagctgttgcctgcaaacataccaattgatttg
aatccaagtacaagtatctgttcgttttgccaatcctccgaaacttcagaggctactgga
cccatgcttcattatgcaaatggaaagtcagttataggagatgctgcaatgcaaccgaat
gtcatacacgtgcatagatgctgtgttgactgggcaccacaagtgtattttgttgatgaa
acttgtaagaacttgaaggcagaagtggcaaggggagcaaagctgaaatgcagcacatgt
ggtctaaaaggagctgctcttggctgctatgtcaaatcatgtaaaagaacttatcatgtt
ccttgtgcaatggatgtttcaacttgccgctgggatcaagagaagtatctcttgctctgt
cctgttcactctaatgccaaatttccacatgagaaatccaggcctaaaaaacaggcaaca
caggagcatcctgcttcagctcatttatcatctcagctttcaaacccgcttggagctttt
catgatgatggtaaaaaagtggttttttgtggctctgctctatcagatgaagaaaaggtg
ctactgatcaatttcgcaagcaaggttggtgctacagtgactaagttctggacctcagat
gtcacccatgtgattgcagcaactgatgcaaatggagcatgctctaggacgctgaaagtc
ctcatggcaattctaaatggacgatgggttctgaaaattgattggatcaaagcatgcatg
aaagtgatgagtcttgtcgaagaagaaccatatgaaattagtcttgacaaccaagggtgt
aatggtggcccaaaagctggcagacttagtgctctggccaatgagccaaagctatttagt
ggcttaaagttttacttctctggtgattatgtgtcgagttataaggaagatcttgaagat
ttagttgaagtgggaggaggtgcggttttgacaagcaaggataaattagaagctaaaaga
catgaatttgaagtgacttcaaatttgctgattgtttacaatcttgatccgccacaagga
agtaaattgggggatgaagtttcaactctttggcagagactaaatgaggctgaagatcta
gctgccaatactggttcccaagtcattggacacacatggattctggagtcaattgctgcg
tgtaagttgcagccttttatttgctaa
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