Lotus japonicus: 130730868
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Entry
130730868 CDS
T04348
Name
(RefSeq) uncharacterized protein LOC130730868
KO
K12830
splicing factor 3B subunit 3
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130730868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130730868
03041 Spliceosome [BR:
lja03041
]
130730868
03036 Chromosome and associated proteins [BR:
lja03036
]
130730868
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
130730868
Spliceosome [BR:
lja03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130730868
Complex B
130730868
Complex C
U2 SnRNP specific factors
130730868
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
130730868
TFTC complex
130730868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
130730868
NCBI-ProteinID:
XP_057438987
LinkDB
All DBs
Position
1:131656009..131666506
Genome browser
AA seq
1364 aa
AA seq
DB search
MAVSEEECSSTKPGPSSSSSSTSRYYLSKSLLRPGAILHVLYAHIRSPSSNDIVFAKETS
IELVVIGEDGNVLTLSDQPVFGTIKDLAVLPWNDKFRGARDPKMWGKDLLVALSDSGKLS
VLTFCNEMHRFFPTTHVQLSNPGNIRDVPGRMLAVDSSGCFIAASAYEGRLALFSMSMTG
NDIIDERIMYPLEGEGTASSSRSIQKTSIHGAIWSMCFISQDSRQLSKEHNPVLAVIINR
KGEYELQLLEWNVKAQTIFVISSNVEAGPLALNIVEVPNSQGLALLFRDGDVLLMDFKDP
HNPCCVYKTSLHFLPSATEEQTFMEDSCKLHDVDDERFSVAACALLQLSDYDPMCIDSDN
DGTNTGHKHVCSWSWEPENNRDPRMIFCVDTGELFMIEIFSDADGPKISLSECLYKGLPC
NALLWVEGGYLAAFVDMADGMVLKLKDGRLCYTNPIQNIAPILDVAVVDYHDEKHDQMVA
CCGVAPEGSLRIIQSGINAEKLLRTPSIYEGISGTWTVRMKVTDSYHSFLVLSFLAETRI
LSVGLSFTDVTDSVGFQPNVCTLACGLVSDGLLVQICQSSVKLCLPTKAAHSEGIPLSSP
ICTSWSPNNLNISLGVVGHGFIVVSTSNPCFLFILGVRLLSTYQYEIYEMQHLGLLNELS
CISIPTQKNEKTESNSTISANNSCIPSFLSGVDVNKTFVIGTHRPSVEIWSFAPDGGVKV
VACGTISLTNTTGTAIDFCVPQDVRLVFVDKYYVLAGLRNGMLLRFEWPAEPSPTSPINV
VDTALSSINLVNSATTAFEKRNDLPSTLQLIAIRRIGVTPVFLVPLNDTLDADIIALSDR
PWLLHSARHSLSYTSISFQPSSHVTPVCSLECPRGILFVAEDSLHLVEMVHSKRLNMWKF
NLEGTPRKVLYHNESRMLLVMRTELDCGTCLSDISCVDPLSWSVVSSFRLEPGETGKSME
LVRFGSEQVLVVGTSMSSGPAIMPSGEAESAKGRLLVLCLDHVQNSDSGSMTFCSKAESS
SQKTSPFHEIVAYAPEQLSCSSLGSSPDDNSSDGIKLDENEVWQFRLAYATTWPGMVLAI
FPYLDRYFLASAGNVFYVCGFPNDTPRRVRRYAMGKTRFMITSLTAHFTRIAVGDCRDGI
LFFSYHEEGKKLEQLYCDPSVRLVADCILMDDNTAVVSDRKGSIAVLSSDHLEDNASPEC
NLTLSCAYFMAEVAMSIRKGSYSYRLPPAYDVLPGDNGPGDTLRNTIIASTLLGSIMIFI
PLSREEYELLEALQARLVLHHLTAPVLGNDHNEFRSRENPVGVPKILDGDMLTQFLELTS
MQQNTILSSELPDKAKPSLKPLLPPHVSVNRVVQLLERVHYALN
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttccgaagaagaatgctcttccaccaagcccggtccatcttcctcttcttct
tccacctctcgctactacctctcaaagtccctcctccgaccaggcgccattctccacgtc
ctctacgctcatatccgctctccctcctccaacgacatcgttttcgccaaggagacatct
atagagttggtggttattggtgaggatgggaatgttctaactctcagtgatcagcctgtt
tttggcaccattaaagatcttgctgtattgccctggaatgacaaattccgcggtgcccgt
gatcccaagatgtggggtaaagaccttttggttgctctatctgattccgggaagctgtcc
gtgctcacattttgcaatgaaatgcacaggttttttcctacaacacatgttcagctatcc
aatcctggaaacattagggatgttccgggaagaatgctagcagttgattccagtggttgt
tttattgctgccagtgcatatgaaggtcgtctggctctgttttcaatgtcaatgactggc
aatgatatcattgatgagagaataatgtatcctttggaaggtgaagggactgcaagtagt
tccagaagcatccagaaaaccagtatacatggtgctatttggagtatgtgttttatttct
caagattccagacaactaagcaaggagcataatcctgtactagctgttattataaatagg
aagggagaatatgaattgcaattattggaatggaatgttaaagcccagacaatctttgtt
atttcttcaaatgttgaagctgggcctttagcacttaacattgttgaagttcctaactct
cagggactcgcacttctattcagggatggtgatgttctcttaatggattttaaagatcct
cacaatccatgttgtgtctacaagactagcttacactttttacctagtgccacggaagag
caaactttcatggaagattcttgtaaattacacgatgtggatgatgaacgctttagtgta
gctgcctgtgctttgttgcagctgagtgattatgatcctatgtgcatcgacagtgacaat
gacggcactaatacaggtcacaagcatgtatgctcttggagttgggaacctgaaaataat
agagatccaaggatgatcttttgtgtagatactggagaactttttatgatcgaaattttt
tctgatgctgatgggccgaaaattagtctctctgagtgtttgtataaaggcctaccttgt
aacgcacttttgtgggttgaaggtggatatctagctgcttttgtagatatggcagatggc
atggtcctgaaattgaaagatggaaggctttgctatacaaaccctattcaaaacattgca
ccaatcttggatgtggcagttgtggattatcatgatgagaagcatgaccaaatggttgct
tgctgtggtgtggcacctgaggggtcattaaggattattcaaagtggtatcaatgcagaa
aagctacttaggaccccttctatatatgaggggatatctggcacttggactgttcgaatg
aaagttactgattcatatcattcttttctagttttatcatttcttgcggagactagaatc
ttgtcagttggcttaagttttactgatgtgactgattctgttggtttccaacctaatgtc
tgtactttggcatgtggccttgtgagtgatggtttgctggttcagatctgccaatcttct
gttaagctttgtttgcctacaaaggccgctcattctgaaggtatccctttgtcctctccc
atttgcacatcttggtcccctaacaatttgaatatcagcttgggggtagttgggcatggt
ttcatagttgtatcaacctctaacccatgcttcttattcatccttggggttagattgcta
tcaacttatcaatatgaaatttatgaaatgcaacatttgggactgctgaacgaattatca
tgcatttccatccctacacaaaaaaatgagaaaacagaatcaaattcaaccatttcagca
aataatagctgcattccttcgtttctaagtggagtggatgtcaataaaacctttgttatt
ggcacacataggccttccgtggaaatttggtcttttgcaccagatggaggagttaaagta
gttgcttgtgggacaatttcgttaacaaatacaacggggactgctatagatttctgtgta
cctcaagatgtacggcttgtatttgttgataagtattatgttctagctggactgaggaat
ggaatgctccttcgctttgaatggccagcagaaccatctcctacatcaccaataaatgtg
gtggacactgctttatcttccataaatttagtaaattctgcgaccacggcttttgagaag
agaaatgaccttccttccacactgcaattgattgccattcgtcgcattggtgttactcca
gttttcttggtgcccttgaatgacacacttgatgctgatataattgctttaagtgatagg
ccttggttgttgcatagtgcaagacatagcctttcctatacttctatctcatttcaacca
tcctcacacgtgactcctgtatgctctcttgagtgtccgagaggaattttatttgttgca
gaagacagtttacatctggtggagatggtccacagcaagagacttaatatgtggaagttt
aatttagaggggactccacggaaggtcttgtatcacaacgaaagccggatgttgcttgtg
atgaggactgaattggattgtggtacatgtttgtctgacataagttgtgtggacccccta
agctggtcagtagtgtcttctttcagacttgaacctggagaaacaggaaagtccatggaa
ttagtcaggtttggaagtgagcaagttcttgtggttggaactagtatgtcttctggtcca
gccataatgcccagtggtgaagctgagagtgctaaaggtcgtcttctggttctctgtctt
gatcatgtgcaaaattcagatagtggttcaatgacattctgttcaaaagcagagtcatca
tctcaaaaaacttcacctttccatgaaattgttgcatatgctcctgaacagctatcatgc
agtagccttggcagcagccctgatgataatagttcggatggcatcaaacttgatgaaaat
gaagtatggcagttccgtttggcttatgcaactacctggccgggaatggtacttgcgatc
tttccttatcttgatcgttacttcttggcatctgctggcaatgttttctatgtttgtggt
ttcccaaatgacactcctcggagagtgagaaggtatgctatgggaaagacgcgcttcatg
attacatctttgactgcacattttactagaattgcagttggtgattgtcgtgatggtatc
ctgttcttttcttaccatgaggaaggaaaaaagttggagcaactttattgtgacccatca
gtgaggttggttgctgattgcattctcatggatgataataccgctgtcgtttcagatcgt
aaaggaagcattgctgttttatcctcagaccatttggaagacaatgcaagtccggagtgc
aacttgacactaagctgtgcttatttcatggctgaagtagctatgagcatccggaagggc
tcgtattcgtacagacttcctccggcttacgatgttttaccaggtgacaatggccctggt
gacacactacgaaatactattattgccagtactctgttaggaagcataatgattttcatc
cctttatcaagggaagaatacgagctcctagaggctttgcaagcaagacttgttctccat
catttgactgcgcctgttcttggaaatgatcataatgagtttcgtagccgtgaaaatcca
gttggagtacccaagatacttgatggtgacatgttgactcagtttctagagttaacaagt
atgcagcaaaatacaatattgtcttcagagctaccggataaggcaaaaccaagcttgaag
ccactcctgccaccacatgtttctgttaatcgggtggttcaacttcttgaacgagttcat
tatgcactgaactaa
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