Lotus japonicus: 130730964
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Entry
130730964 CDS
T04348
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
lja
Lotus japonicus
Pathway
lja03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130730964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130730964
03036 Chromosome and associated proteins [BR:
lja03036
]
130730964
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130730964
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130730964
PBAF complex
130730964
GBAF(ncBAF) complex
130730964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
130730964
NCBI-ProteinID:
XP_057439104
LinkDB
All DBs
Position
1:56774760..56777674
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AA seq
525 aa
AA seq
DB search
MNNDGKNVAASSSLFGHSGTATPPQWNHTTNFVSRSNPQAQYPGHFQLSQPQQSQLLAQA
QFAQARAQLQSQVVLARLQSQAQIVENLHNANASMANVMSTPAPGSSRRAAQKLPSRFSG
SSSTNQSLRASADGGKKREFLEKQIPEKVAALLPESALYTQLLDFEAMMDDELARRKMDV
QEAIRCPPHVQKTLRMYVFNTFSKRTKMDCGNESAEEPSWSLKITGRILEDGKDTVPGNL
QRSSPPCPKFSAFFKKVTICLDQSLYPENHVIVWDSALSPKQHDGFEVRRKGDKEFTAVI
RLEMNYSPEKYMVSTELFKLLGVQVETRPKILAALWHYVKSRNLQSRDDPSFFMCDPSLR
RLFGEEKIKFTVAAQKLLPHLSKPQPIQLEHNIKLSGYCPGGTTCYDVLVDVPFPLENEV
SAFLASTESPKEMEALDEVICASLKKIQEHRRRRASFLNFSQSPAEYVNTSIASQSKALK
LVARDASCNAVKEQRSEFYNKPWVEDAAIRYLNRKTAGSDTPGGN
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaataacgatggaaagaatgttgctgcatcatcatcattgtttggtcattctggaaca
gccacaccgccacaatggaaccacacaaccaattttgtgtctcggtcaaacccccaagcc
caataccctggtcattttcagctttcacaaccccaacaatcgcagctgcttgcgcaggct
cagtttgcgcaagcacgggcacaattgcagtctcaggtagtgcttgctcgtttgcaatct
caagctcagattgttgagaatttacataatgctaatgctagtatggctaatgttatgtca
actccggcccctggaagctcaaggcgagcagcccaaaagctgccttcacggttttccggt
tcatccagtaccaaccaatccttgcgggcctcggctgatgggggaaagaagagggagttc
ctggagaagcaaataccggagaaggttgctgcacttctgcctgagtctgctctttatact
cagttgcttgattttgaggctatgatggatgatgagttggccaggagaaagatggatgta
caggaggctattaggtgccctccccatgttcagaaaactcttcgtatgtatgtgtttaat
accttctcgaagcgcaccaaaatggattgtgggaatgaaagtgctgaggaaccttcttgg
tctcttaagataactggaaggatattggaagatggtaaggatactgtgcctggaaatttg
cagagatcaagtcctccgtgcccgaagttctctgctttcttcaagaaagttaccatatgc
ttggatcagagcctttatcccgagaatcatgtcattgtatgggacagtgctctctcacct
aagcaacatgatggttttgaggtgaggaggaaaggagataaagaattcactgccgtgatc
agactagaaatgaattattctccggagaagtatatggtctcaacagaattgtttaagctt
ttaggggttcaggttgagactcgcccaaaaatattagctgctctttggcactatgtgaag
tccaggaatctacagagtcgagatgacccttcatttttcatgtgtgatccttctctccga
aggttgtttggggaagaaaagatcaaattcaccgtggcagctcagaagttgttaccgcat
ctgtcaaaaccacagcccatacagttggagcataacatcaagctttctggatattgtcca
ggtggaactacatgttacgatgtgctggtcgacgtgccttttccactggagaatgaagtg
tccgcatttttggctagcactgagagtccaaaagagatggaagctttagatgaggtgatt
tgtgcttccttaaagaagatccaggaacatcgaaggagacgggcttcctttcttaacttt
agtcagtctccagctgagtatgttaacacttcgattgcttctcagagcaaagctctaaaa
cttgtagctagagatgccagctgtaatgctgtaaaggaacagcggtctgaattctacaat
aaaccatgggttgaggatgccgccattcggtacttgaaccgcaaaactgctggaagtgat
actcctgggggcaactaa
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