Lotus japonicus: 130733269
Help
Entry
130733269 CDS
T04348
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130733269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130733269
03012 Translation factors [BR:
lja03012
]
130733269
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130733269
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130733269
Translation factors [BR:
lja03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
130733269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
OB_NTP_bind
Helicase_C
R3H
HA2_C
Ank_2
Ank_5
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
ResIII
Ank
NPHP3_N
AAA_7
AAA_23
Rad17
ABC_tran
Ank_3
T2SSE
AAA_16
Motif
Other DBs
NCBI-GeneID:
130733269
NCBI-ProteinID:
XP_057441380
LinkDB
All DBs
Position
1:complement(6332829..6341774)
Genome browser
AA seq
1173 aa
AA seq
DB search
MAKNKGKNKKKSYGHTLPVDESTRLRFSQILEQFCDSNDEVFKFDANLSNMERALVHQLS
RKMGLKSKSHGTGNARRIFVQKFGKMVDRDNGPEKLPHFTFSQEANWVLSDLFTHYPPGD
GRSWDMIGENNDGADSRRQNKDDIFARPSMSKAEIAKRLQTLGSNTTADNLKQITKNRSK
LPIASFKDVITSTVESHQVVLISGETGCGKTTQVPQFILDHMWGKGEVCKVVCTQPRRIS
AISVSERIASERGETIGENVGYKIRLESKGGRQSSIVLCTTGILLRVLVSKGSRGSKKDE
ISGITHIIMDEIHERDRYSDFMMAVLRDMLPSNPHLRLILMSATIDTMRFSQYFGGCPII
SVPGFTYPVQTFFLEDVLSIIKSRDDNHLDSTTCNIPINNRKLSEEEMLSMDEAINLAWS
NDEWDMLLELVSFEGTPEHFNYQHSLTGLTPLMVFAGRGRVGDMCMLLSFGADCNLRAKD
GTTALEIAERENHSEAAEIMKQHMDTNFSNSTEEKLLNKYLSTVNPEFVDVVLIEQLIKK
ICTDSKDGGILVFLPGWDDINRTRQRLLASSFFKNSSLFMVISLHSMVPTMEQKKVFKHL
PHPCRKIVLSTNIAETAITIDDIVYVIDAGRMKEKSYDPYNNVSTLQSSWISKASAKQRE
GRAGRCQPGICYHLYSKARAASLPDFQIPELRRMPIEELCLQVKLIDPSCKIEEFLGKTL
DPPVYESIRNAIVVLQDIGALSLDEKLTQLGEKLGSLPVHPVTSRMLFFGILMNCLGPAL
TLACASDYRDPFTLPMLPEDKKRASAAKSELASLYGGCGDQFAVLAAFQCWNNAKRMGLE
ARFCSQYFVSSNSMHMLSGMRKQLQTELIRNGFIPEDVSSYNVNASDPGVLHAVLVAGLY
PMVGRLCSPNKGGGRRTVTVIETASGDKVRLHTHSTNFKLSFKRNLEHTLVVYDEITRRD
GGMNIRNCTVVGPLPLLLLSTEIAVAPGKDNDNDDGDGDGDEDDEGSKEDEDGIEDEMEV
DTKSSGHCEDKFMSSPDNMVRIIMDRWLNFDSTAIDIAQLYCLRERLSAGVLYKVTHPRK
PLPPILEASMHAIACILSCDGCSGMPVIADGLDILTTMVDDTNLGKQATGTKRLGKRPKG
SLAELVYHKDQSQTSSSFHLIMAQMEVNDNFQL
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaacaaggggaagaataagaagaagagttatgggcacactctcccagttgat
gaatccaccaggcttcgcttttcccagattctagaacagttctgtgattccaatgatgaa
gtgtttaagtttgatgctaatttgtccaacatggaacgtgctttggtgcatcaattgtcc
cgaaaaatggggctcaaatcgaaaagtcacgggactgggaatgcgaggagaatttttgtt
cagaaattcggaaagatggttgacagggataatgggcctgagaaacttcctcatttcaca
ttttctcaagaggcaaattgggtattaagtgatttatttactcattatccacctggtgat
ggacgctcgtgggacatgattggtgaaaataatgacggtgccgatagtagaagacaaaat
aaggatgatatctttgccaggccttctatgtccaaagctgaaatcgccaagagattgcaa
acccttggttctaatactactgcagataacttgaaacagatcaccaaaaatagatctaag
cttccaattgcatctttcaaggatgtaattacatcaactgttgaatcccaccaggtagtt
ctcatatctggtgagactggttgtggaaagactacgcaggtcccacaatttattttggat
catatgtggggtaagggcgaggtatgtaaagtagtttgcactcagcctcggcgtatctct
gcaatttcagtttccgagagaatcgctagtgagagaggtgagactattggagaaaatgtt
ggatacaagatacggttagaaagcaaaggaggaaggcaatcatctattgtgctgtgtact
actggaattctattaagggtgttggtttctaaaggttctcgtgggtcaaagaaggatgaa
atttctggcatcactcacataattatggatgaaattcatgaaagggaccggtactcagat
ttcatgatggcagtcctcagagacatgctcccttcaaatcctcacctacgactgatatta
atgagtgctaccattgatactatgagattttctcaatattttgggggttgccccatcatc
agtgttccagggttcacttatccggtccaaacattctttttggaggatgtactttcgatt
ataaaatctagggatgataatcatcttgatagtaccacatgtaatattccaataaacaat
cgcaagctaagtgaagaagagatgctttctatggatgaagctataaatttggcatggtct
aatgatgagtgggacatgttgttggagttggtttcttttgaaggaacgcctgaacacttc
aattatcagcattctttaactggccttacaccattaatggtgtttgctggaagaggtaga
gtgggtgatatgtgcatgctcttatcttttggggcagattgcaatttaagagccaaagat
ggaacaactgcactggaaattgctgaaagggaaaatcattcagaagctgctgaaataatg
aagcagcacatggatactaatttttccaactccacagaagagaagttacttaataaatat
cttagcactgtcaaccctgaatttgtagatgttgttctgatagagcagctgataaaaaaa
atatgtactgattcgaaagatggaggtatccttgtttttcttccaggctgggatgatata
aacagaacgcgtcagagactgcttgcatcctcttttttcaagaactcatcgctgtttatg
gttatatctctgcattctatggttccaaccatggagcaaaagaaggtttttaagcaccta
ccacatccctgccgcaaaattgttctctcaaccaatattgctgaaacagctatcaccatt
gatgatatagtgtatgtcatagacgctggacgaatgaaggaaaaaagctatgacccttac
aataatgtgtcaactcttcaatcatcttggatttcaaaagcaagtgctaagcagcgagag
gggcgcgctggccgttgtcaacctggtatttgctatcatttgtattcaaaggctcgagca
gcttccttgccagattttcagattccagaacttaggagaatgcctattgaggagctttgt
ctgcaggtcaagttgattgatccgagctgcaaaatagaagagtttcttggaaagacacta
gatcctcccgtttatgagtcgatacgtaatgctattgtcgttcttcaagacattggggca
ttgtcacttgatgaaaaactcacccaactaggggagaagcttggatctcttcctgttcac
cctgtaaccagcaggatgcttttttttggtatattgatgaactgccttggtccggcatta
actctagcttgcgcatctgactatagagatccatttacgcttccaatgttacctgaagac
aagaagagagcttcagccgcaaaatctgagcttgcttctttgtatgggggatgtggtgat
cagtttgctgtattagctgcattccagtgctggaataatgcgaaaaggatgggtttagaa
gcacggttttgttcgcaatattttgtatcttctaattccatgcatatgttatctggcatg
cgcaagcagctccagacagaactaatccgaaacgggtttattcctgaagatgtttctagt
tacaacgtgaatgcatctgaccctggtgttctccacgcagttctggtagcaggtttgtat
ccaatggttgggagattgtgttcaccaaataaaggtggtggaagaaggactgtgactgtt
atcgaaactgcaagtggtgataaagttcggttgcacactcattccacaaattttaagttg
tcattcaagagaaatttagagcacactttagttgtgtatgatgagattactcgtcgtgat
gggggtatgaacataaggaactgcacggttgttggaccacttccactcttactgctttca
acagagattgccgttgctccaggaaaagataatgataatgatgatggggatggggatggg
gatgaggatgatgaagggagtaaagaagatgaagatggaattgaagatgagatggaggtt
gataccaagtctagtggacactgtgaggacaagtttatgtcttctcctgataatatggtt
agaataatcatggaccgttggcttaattttgattcaacagcaattgatattgctcagcta
tactgcttgagagagcgactatctgcaggagttttatacaaagtgacacatccaaggaaa
cctcttcctcccatcctagaggcttccatgcatgctatagcttgcattttgtcttgtgat
gggtgctctggcatgccggtgatcgcagatggtttggacatactgaccactatggtagat
gacacaaatctaggcaagcaagcaacggggacaaagcggttagggaagagaccaaaggga
tcacttgcagagcttgtatatcataaggatcaatcccagaccagttcctcctttcacttg
ataatggctcaaatggaagttaatgataattttcaattgtag
DBGET
integrated database retrieval system
