Lotus japonicus: 130733552
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Entry
130733552 CDS
T04348
Name
(RefSeq) SNF2 domain-containing protein CLASSY 2-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
lja
Lotus japonicus
Pathway
lja03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130733552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lja03400
]
130733552
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
130733552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
130733552
NCBI-ProteinID:
XP_057441758
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All DBs
Position
1:10624660..10633800
Genome browser
AA seq
1327 aa
AA seq
DB search
MNRKRKRDPLKNPFNSNPFEAVVSGSWQAVEYMKIGLGTASLHFMDNHHVEMMDKGPLAD
VRVRSRRATLSDCSSFLRPGIDICVLSTPQSKKDSDELNLKPVWLDAQISSIQRKPHDSE
CKCQFYVRYYVNQGSLGAELRTIRKETKMVGLNQISILQRLEHSPCENVHYRWGSSEDCA
SIPHTKMLLGKFLTDLSWLVIASVVRKVSFCARSVENKLVYQILESDNISTSLNTEPHIS
VLNFKVDDGGVVVSVVSQVTITNSKRAESDHEHEHEPGKDKAVSPSYNVDGLRRSKRRNV
QPERYLGCNVTQIDVGCFRSQPPVKLQTWKDDKDDEMSLPLSRLFGVPQICPEGDMKWGQ
RISVRPEEDANRCKKPWKFNTVNNTVKELKVYNRRAKTGKGKLGDANKNEQQPQLAIVPL
PDQDEPIAVDLSDLKDKVTRSDEHDFAEIPSQYHHLINSPRPKKNSLHLLASEPQNVPAK
SEYAEKSEDVPLRHHYSYSTSKLHKKSLCDADDIDLGTKWAGINSSKGSQARKHRPTHLR
SRNQDSERSYYKDRTLNAAAYKDLINSYLKNMNTRPDEEETPLTDQWKQHSNTTSNFEED
EAAKTSPAEDAEEISELDMLWREMEVSLASCYLEETEGSNATILPPTEEKPKIVCEHDFR
LDEQIGLYCHRCGFVKNEIRYIFPSFVEHSRWYREEKQHAAEDPEPNADEDDDFQLFSNL
ASSDEPISEENDNVWSLIPELRKKLHVHQKKAFEFLWRNIAGSTNPTIMEEASKKRGGCV
ISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPLPVYLIHGR
RTYRVFNQKKDMVFPGIPKPTEDVKHVLDCLEKIQKWHSQPSVLIMGYTSFLTLMREDSK
FAHRRYMAKVLRESPGLLVLDEGHNPRSTKSRLRKCLMKVQTELRILLSGTLFQNNFCEY
FNTLCLARPKFPQEVLKALDRKYKKKKKLGTEKARYLTESRARKIFLDEIAKKIDSNVGE
ERMQGLNMLRNVTNGFIDNYEGASSDGLPGLQIYTLLMNTTDVQHEILHTLHKKMAECSG
YPLELELLITLGSIHPWLIKTAVCAEKFFSRERLRELDKCKFDLKIGSKVKFVLSLIYRV
VKTEKVLIFCHNIAPVKLFIEYFEKYFGWQKGREVLALTGELELFERGRIMDKFEEPGGA
SKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTG
SLEEDKYRRTTWKEWVSSMIFSEAFVEDPSKWQAQKIEDETLREMVGEDRSKSFHMIMKT
EKTTTNK
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atgaacagaaaaaggaagcgggatccgttgaagaatccattcaattctaacccatttgaa
gcagttgtttctggctcatggcaagctgtggagtacatgaaaattgggttgggaactgca
tccttgcatttcatggacaatcaccatgtggagatgatggacaaaggccctttagcagat
gttcgagtaaggtcgaggagagctactttatcagattgctccagttttttgcgtcctggg
atcgacatatgtgtgctatcaacccctcaaagtaaaaaagattcagatgaacttaatctc
aagcctgtttggcttgatgctcaaataagttctatacagagaaagccccatgactctgag
tgcaagtgtcagttttatgtcagatactatgttaatcaaggttcacttggcgcggagctg
agaactattcgtaaggagactaaaatggttggactcaatcaaatctccatcctccaaaga
cttgaacacagtccttgtgaaaatgtgcactatcggtggggttcatctgaggactgcgct
tcaataccgcacactaaaatgctcttgggaaaatttttaacggatctttcatggttagtt
attgcatctgttgtgaggaaggtttcattctgtgctagatctgttgaaaacaagcttgtc
tatcaaattctggaaagtgataatattagtacttcattgaacactgagcctcatataagt
gttctgaatttcaaagtagacgatggcggcgtggtagtgtccgttgtttctcaagttacc
ataactaactccaagagagctgagtctgaccatgaacatgaacatgaacccggtaaagat
aaagcggtgtcaccatcttataatgttgatggcttacgacgttcgaaacgccggaatgta
caacctgagcgttacctcggttgcaatgttacacagatagatgttggttgttttagaagc
cagccaccagttaagttgcaaacatggaaagatgataaagatgatgaaatgtcattgcca
ttatcacgcctgtttggtgtgccgcaaatctgtccagaaggggacatgaaatggggacag
aggatttcggtccgtccagaagaggatgctaacagatgtaaaaagccctggaaattcaac
acggtgaataataccgtcaaggagcttaaagtgtacaataggagggctaaaaccggcaag
gggaagctaggtgatgccaataaaaatgaacagcaacctcaacttgctattgttcctctt
cctgatcaagatgaacctatagccgttgatcttagtgatctcaaagacaaggttactaga
agtgatgaacatgactttgctgaaattccttcccaatatcatcatctgattaatagccct
cgaccaaagaaaaacagccttcacttgttggcttctgagcctcagaatgtgcctgcaaag
tcagaatatgcagaaaagagtgaggatgttcctttgaggcatcattatagttacagcacc
tccaagctacacaagaagagtttatgtgatgcggatgatatagaccttggaactaaatgg
gcaggaataaattccagtaaagggtctcaagcgagaaaacatcgtcctacgcatttaaga
agtagaaatcaggacagtgaaagaagttattataaagacagaaccttaaatgcagctgcc
tacaaggacttgataaattcatacttaaagaatatgaatacaagaccagacgaagaagaa
acacctcttaccgaccagtggaagcagcatagcaacacaacaagcaactttgaagaagac
gaagcagcaaagacatcgcccgcagaggatgcagaggaaatatctgaattggatatgttg
tggagagaaatggaagtgtcattggcatcatgctatcttgaggagacagagggttcaaat
gcaaccattttgcctcctacggaagaaaaaccgaagatagtttgcgagcatgattttaga
ttggatgagcaaattggattgtactgccatagatgtggctttgtgaaaaatgaaatcaga
tatatttttccgtcctttgttgaacattctaggtggtaccgtgaagagaagcagcatgct
gcagaagatccagagcccaatgctgatgaggatgatgatttccaacttttctccaatctt
gcttcttctgatgaacctatatctgaagaaaatgacaatgtttggtcattgattccagaa
ctccggaaaaagttgcatgtccaccaaaagaaagcttttgagtttctttggcgaaatatt
gcagggtctacaaatccaacaattatggaagaagcatctaaaaaaagaggtggttgtgtg
atatctcatactcctggagctggaaaaacttttctcattattgcttttcttgtgagctac
ttaaagttattcccagggaagagacctctagtccttgctccaaagacaacactctatact
tggtacaaagaatttatcaagtgggagattccgttaccggtgtatctgattcacggtcgt
agaacctaccgcgtgttcaatcagaaaaaagatatggtttttcctggaattccaaagccc
acagaggatgtcaagcatgttttggattgtttggagaagattcaaaaatggcattcccaa
ccaagtgttctcatcatgggttatacatcatttttaacattgatgcgagaggattcaaag
tttgcgcacagaaggtatatggccaaggtattgagggaaagtcctgggctcctggtacta
gatgaagggcacaatcctagaagcactaaatcaaggttgagaaaatgtttgatgaaagta
cagacagaattgagaatattactttcaggtacattgtttcagaacaatttttgtgaatat
tttaacactctctgcttagcaagaccaaagtttcctcaagaagtactgaaagcattggac
cgaaagtacaagaaaaaaaagaaattaggaacagaaaaagcgcgttatttaacagagtca
cgggctagaaagatattcctagatgaaattgctaagaagattgactcaaatgttggtgag
gagaggatgcaaggtctaaacatgttgagaaatgtgacaaatggtttcatagataattat
gaaggtgcgagttcggatggtctacccggtttacaaatttacacattgctaatgaacaca
actgatgtgcagcatgagattttgcatacactacacaagaaaatggctgagtgcagcgga
taccctctggagttagagcttttgataactcttggatcaatccatccttggttgatcaaa
acagctgtctgtgctgaaaagttcttttctcgggagcgattgcgggagcttgataaatgc
aagtttgatttaaaaatagggtcaaaggtgaaatttgttttgagccttatttaccgcgtt
gtcaagacagagaaggttcttatcttttgccacaacattgcacctgtgaaattgttcata
gaatattttgagaagtactttggatggcaaaagggccgtgaagttttggcactaaccggg
gagcttgagctctttgaaagaggtagaataatggataagtttgaggagcctggtggagca
tcaaagatactccttgcttcaattacagcttgtgctgaaggcattagtttgacagcggct
tcacgcgtgattatgttggactcggagtggaatccgtcgaaaacaaagcaggctattgcg
cgcgcctttcgtccgggccagcagaaagtggtgtatgtgtatcaactcttggtgacaggc
tcattggaggaagataagtaccgaagaaccacttggaaagagtgggtttcaagcatgatt
ttcagtgaggcctttgtggaggacccttctaagtggcaagctcagaagattgaagatgag
acactgagggaaatggttggagaggaccggtctaaatcattccatatgataatgaagacc
gagaaaactacaacaaacaaatga
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