Lotus japonicus: 130733606
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Entry
130733606 CDS
T04348
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130733606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130733606
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130733606
Spliceosome [BR:
lja03041
]
Complex A
U2 snRNP components
U2 related factors
130733606
Complex B
130733606
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
FeoA
Motif
Other DBs
NCBI-GeneID:
130733606
NCBI-ProteinID:
XP_057441816
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All DBs
Position
1:11478747..11483845
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AA seq
1134 aa
AA seq
DB search
MEEVKHKSRKEDYEVKESETKRSHRDRDRERVRKERSEGRHRDREKRDRESRRHEREKST
DSEDRDREKKRKDKDKSKDKEREKGRDKKRDRDREDKERERAERAREKERERERKEEKER
IREKEREREREKEKERRDHEREKEKERERERGRRVRDREKHRDDDSEHSDSEPRERDRKR
HRKEDDGYKGRERERSSGKSNRKTEELEASPRKKSDGDDSDTKEKEIKPTREEEMEDEQR
RLDDEMEKRRRRVQEWQELRRKKEEAEREKGGEASAIELESGKTWTLEGESDDEDGTGTG
KLNTDMDVDEDDKSADKEPGDSMVVDVDNGAVASDLQNGAADASPDEEIDPLDAFMNSMV
LPEVEKLNNAVTSSFVDKAADLNPKDKGDERSSSAHPRKGSNKSIGRIIPGEESDTEYAD
PETEGDDVDEDDDEFMKRVKKTKVEKLSIVDHSKIDYIPFRKNFYIEVREISKMTPEEVS
VYRKQLELKIHGKDVPKPVKSWNQTGLTSKILETIKKHNFEKPMSIQAQALPTIMSGRDC
IGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVL
GIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEAD
RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKD
ISQLVEVRPENERFFRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGA
KDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINYDVSNHYEDYVHRVGRTGR
AGRKGCAITFISEEEAKYAPDLVKALELSEQTVPDDLKALADSFMAKVNQGLEQAHGTGY
GGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGDVSQHPALAQFLAA
SKVNTSVMHTPISAAQLIPNGGLPVPLPILPTSTVLPGTGLPLATTDGAARAALAAINLQ
HNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFVNPGK
IPGPGERKLYLFIEGPSEQSVKRAKTELKRVLEDITNQALQLPGGSQPGKYSVV
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtaaagcataaatcgaggaaagaagattatgaggtgaaagaaagcgagacg
aagaggagtcaccgtgatcgtgatcgagagcgtgttagaaaggagagaagcgaggggagg
catagggatagggagaagagggatcgtgagtcgcggagacatgagagggagaagagtact
gactctgaagatagagacagggagaagaagcgcaaagataaagataaatcgaaagataaa
gagagagaaaagggtcgagataagaaaagggacagagatagggaagacaaggagagggaa
agggcggaacgagcaagggagaaagaaagagagagggagagaaaggaggagaaggagagg
attagagagaaagaaagggaacgggagcgggaaaaggaaaaggaaaggagggatcatgaa
agagagaaggaaaaggaaagagaaagagaaagagggaggagagtacgtgacagggagaag
catagggatgatgatagtgaacacagtgatagtgaacccagggagagagataggaagcgg
cataggaaggaggatgacggttacaaggggagagagagggaaaggagcagtggcaagtca
aacaggaaaactgaggaacttgaagcaagtccaaggaaaaagagtgatggagatgactca
gataccaaagaaaaggagataaaacctacccgtgaagaggagatggaggatgaacaaagg
aggttggatgatgaaatggaaaagcggaggaggagagttcaagagtggcaagagctaaga
aggaagaaagaagaagcagaaagagaaaagggtggtgaagcaagtgctattgagctcgag
tctggaaagacctggacacttgaaggggaatcggatgatgaagatggaacaggtactggg
aagctaaatacagatatggatgtagatgaagatgacaaatctgctgataaggaacctggg
gactcgatggttgtagatgttgataatggagcagttgcatctgatttacagaatggggct
gctgatgcttctcctgatgaggaaatagatccattggacgctttcatgaattcaatggtt
cttcctgaagttgaaaagctgaacaatgctgttacttcgtcatttgttgataaagctgca
gacttaaacccgaaggataaaggggatgagcgaagtagtagtgcacatccaaggaaaggt
tcaaataaatctattggcagaataattcccggtgaagagtctgacactgaatatgcagat
cctgaaactgagggggatgatgtagatgaagatgatgatgagttcatgaaaagagtgaag
aagacaaaagttgagaagctttctattgttgaccactcaaagattgactatataccattc
agaaagaatttttatattgaagtgagagagatctcgaagatgactcctgaagaagtttca
gtatacaggaagcagttggagttgaagatacatgggaaggatgtgcctaagcctgtaaaa
tcatggaaccagactgggctgactagcaaaattttggagacaataaaaaaacataacttc
gaaaagcctatgtctattcaagctcaggcgctgcctacaattatgagtggtcgagattgc
ataggtattgctaaaactgggtcaggtaaaacacttgcttttgttctgccaatgttgagg
catatcaaggatcagccgccagttgttgcaggggatggacctattgggcttatcatggct
cctacaagggaacttgttcaacagattcacagtgatataaagaagtttactaaggtactg
ggtatcaggtgcgtgcctgtctatggtggttcaggtgttgctcaacaaatcagtgagttg
aaacgtggtactgagatagtggtttgtactccaggtaggatgattgatatactatgcacc
agtagtgggaaaataactaacctgcggagagtcacttatttggttatggatgaggctgat
cgaatgtttgacatgggctttgaacctcaaatcacacgaattgttcagaatattcggcca
gatcgtcaaacagttctcttctctgctactttcccccgccaggttgaaattctggcacgc
aaggttttgaataaacctgtagaaatacaagttggcgggagaagtgttgtgaacaaagac
atatcacagctagttgaggtgaggccagaaaatgagaggttctttagactcttagaaata
ctgggcgaatggtatgagaaaggaaagatcttgatatttgtccattcacaggagaaatgt
gattctttgttcaaggatctgctcaggcacggttacccatgtctttctcttcacggggct
aaggatcagacagaccgtgaatccacaatttctgattttaaaagcaatgtctgcaatttg
ttggttgcaacaagtattgctgcccggggattagatgtcaaggagctcgaattggtgatc
aattatgatgtttcaaaccactatgaagattatgtacatcgtgttgggcgcactggccga
gctggccgtaagggttgtgccattacatttatttctgaggaagaggcaaaatatgcacca
gatctggtgaaagccttggagctatctgagcagactgttcccgatgatctgaaagctctt
gctgatagctttatggcgaaagtcaatcaaggactggagcaagcgcatgggactggttat
ggaggaagtggctttaagtttaatgaagaggaagatgaggtgaggaaagcagcaaagaaa
gcgcaagccaaagaatatgggtttgaagaagacaagtcagattctgaagatgaagatgat
ggtattaggaaggcaggtgatgtctcacagcatcctgctcttgctcagtttcttgctgcc
tcaaaagtgaatacttctgtgatgcacactcccatctcagctgcccagctcattccaaat
ggtggactacctgttcctttgccaattctcccgacttcaacagtcttgcctgggacaggg
ctaccccttgctacaactgatggggcagctcgagcagcattagctgctataaacctgcag
cacaacttggcaaaaatacaatctgaagcattgccagagcattacgaggctgagttggaa
ataaatgatttcccccagaatgctcgctggaaagtcacacacaaggaaaccttaggcccc
atttctgaatggactggagctgccattaccaccagggggcagtttgtcaaccctggcaaa
atcccaggacctggggaacgcaagctctacttgttcattgagggtcctagtgagcaatca
gttaagagagccaaaacagaattgaagcgtgttttggaagacatcacaaaccaggctttg
caacttcctggtggatctcaaccaggcaaatactctgtcgtataa
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