Lotus japonicus: 130733730
Help
Entry
130733730 CDS
T04348
Name
(RefSeq) DNA repair protein RAD4 isoform X1
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
lja
Lotus japonicus
Pathway
lja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
130733730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lja03400
]
130733730
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
130733730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
130733730
NCBI-ProteinID:
XP_057441961
LinkDB
All DBs
Position
1:13552517..13560341
Genome browser
AA seq
916 aa
AA seq
DB search
MPRRGSGSQRKRPSLPSPSPSGDETRSPHRPEETLTEISREAVGKLLRRANKVGSSKKKN
KPEVEPEINGSQVSEQILQPQTSEVGHCGGNSIGNVSAEKKRNHVSLGQGFLDEKEELHD
SDWEDGAVAMDDRPVTVELNVTPDSAVRKQIRRASAEDKELAELVHKAHLLCLLARGRLI
DSACDDPLIQASLLSLLPAHLLQLSNVTELTSKALHPLIVWFHDNFHVKNCANEDKSPHF
ALASALESHEGSPEEIAALAVALFRALNLTARFVSILDVASIKPVASGSSKGIFSTSTPM
ISKLKLDFKSPKKSLSSNEREVVGESSLGRSLKSKKACTTSHMTRSKDPPVAKDLNQSVT
NSPTSKAHDNNPESYAIDKSHKPKRKGDLEYEMQLEMALSATAVECSENKMESGVNAESS
NVSCPSKRMKIIKGEESSTSPQVISTAVGSMKVGSPLYWAEIYCSQENLTGKWVHIDAVN
MIIDGEDKVEAMVAACKTSLRYVVAFAGQGAKDVTRRYCMKWYKIAPQRVNSTWWDSVLA
PLRDLESGATEGVVLSRTNQIVATEANMMDSSAPSRSSLEDIELETRALTEPLPTNQQAY
KSHLLYAIEKWLTKYQVLHPKGPILGFCSGHPVYPRTCVQTVKTKERWLREGLQVKPNEH
PVKVLKCSIKPQKVQDSEADDNGCSDSKENIKLYGKWQLEPLILPHAVNGIVPKNERGQV
EVWSEKCLPPGTVHLRLPKAFYVAKRLEIDYAPAMVGFEFRNGRSYPVFDGIVVCAEFKD
ALLEAYAEEEERRQADEKRRDEAQALNRWYQLLSSIVTRQRLNNRYNSHLSSEMPSDVQC
MNDNVSNATACGSSDENQNPRHHQVEKCDADFDASLSTPVKDHEHVFLKEYESFDKGTSL
LTKRCQCGFSVQVEEL
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgtagaggaagcggttcacagcggaagaggccgtctctaccctcaccctcaccg
tcaggagatgaaactagatccccgcatcgcccggaagaaacactgaccgaaatatctcgg
gaggctgtgggaaaacttttacgccgtgctaataaagttggatcttccaagaaaaagaac
aagcctgaggttgagccagaaataaatggaagtcaagtttcggaacaaattcttcaacca
cagacttcagaagttggacattgtggtggaaattccattggaaatgtttctgcagagaag
aagcgtaatcatgtaagtttaggccagggcttcttggatgaaaaggaagaactgcatgac
tcagattgggaagatggtgcagttgctatggatgatcgtcctgtgactgttgaattgaat
gtgacccctgattcagctgtacggaaacaaatacgtcgagcttctgctgaagataaggaa
ttggctgaactagtgcacaaggctcatttgctttgtttacttgctcgtggaagattaata
gacagtgcttgtgatgatcctcttattcaggcttctttgctttctctacttccagcgcac
ttgctccagctatcaaatgtcacagagctcacttcaaaagctttacatccgttaatagta
tggttccatgataatttccatgttaaaaactgtgcaaatgaagacaagtcaccacacttt
gctttggcgtcagctttagaatcacatgaaggtagtcctgaagagattgcagctttagca
gtggcactatttagagctttaaatcttacagccaggtttgtgtccattttggatgttgct
tctattaaaccagttgcaagtggatctagtaaggggatatttagtacttctaccccaatg
atatctaagctaaaattggatttcaagtcaccgaaaaaatcattatcttctaatgagaga
gaagtagtcggtgaaagttctcttggccgttcattgaaaagtaagaaagcctgtacaaca
agccacatgactcggtctaaagatcctcctgttgctaaagacttgaatcaaagtgtgaca
aactcgccaacttccaaggcacacgacaataaccctgaatcatatgccattgacaaatct
cataaaccaaagaggaaaggggatcttgaatatgagatgcagttggaaatggctctttct
gctacagcggttgaatgttcggagaataaaatggagtcaggagtgaatgctgagtcatca
aatgtttcttgtccatcaaaaaggatgaaaataattaaaggtgaagaatcttcaacctcc
cctcaagtaatttcgacggcagttggatcaatgaaagtaggatctcctctgtactgggca
gaaatctattgcagtcaagaaaatttgacaggaaagtgggtgcatattgatgctgttaat
atgattattgatggagaggacaaggtcgaagccatggttgctgcgtgcaaaacatctttg
agatatgttgttgcttttgctggacagggggccaaagatgtgacccgcaggtactgtatg
aagtggtacaagatagcaccacaacgagttaattcaacatggtgggattcagtgttggct
ccactgagagacttggagtctggcgcaactgaaggtgtggttctttcaagaacaaaccaa
atcgttgctacagaagccaacatgatggattcttctgctccttcaaggagttctcttgag
gatattgagttagaaactagagcattaactgagcctcttccaaccaaccagcaggcctac
aaaagtcatctactttatgccatagaaaaatggcttacaaagtatcaagtacttcatcca
aagggtccaattctgggcttttgttcagggcacccagtttaccctaggacttgtgtgcaa
acagttaagacaaaagagagatggctccgggaaggactgcaagtgaaacccaatgaacat
cctgtgaaggttcttaaatgttccattaagccccagaaagtacaagattctgaagctgat
gacaatggctgctctgattctaaggaaaatataaaactttatgggaagtggcaactggaa
ccactgattctacctcatgctgtgaatgggattgttcccaagaatgaacgtggtcaggta
gaagtttggtctgagaaatgtcttccgccaggcactgtgcacttaaggcttccgaaggcc
ttttatgttgccaagaggctagagattgattatgcgcccgctatggttggttttgaattt
agaaatggccgttcatatcctgtctttgatggtattgtggtctgtgctgagttcaaggat
gcacttctagaggcatatgcagaggaagaggaaagacgtcaggctgatgagaagagaagg
gatgaagcccaagctcttaatcggtggtaccagcttctttcatccatcgtaactcgtcaa
aggttaaataatcgttataacagccatttgtcatcagagatgccatctgatgtccaatgc
atgaatgataatgtgtcaaatgccacagcttgtggtagttccgacgagaatcagaaccca
agacaccatcaggtggagaaatgcgatgcagattttgatgcatcgttaagtactccagta
aaggaccatgagcatgtttttttgaaagagtacgagagctttgataagggaacctctcta
ttgaccaagcgatgtcaatgtggattttcagtccaagtagaagaattatag
DBGET
integrated database retrieval system
