Lotus japonicus: 130733904
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Entry
130733904 CDS
T04348
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
lja
Lotus japonicus
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lja03016
]
130733904
Enzymes [BR:
lja01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
130733904
Transfer RNA biogenesis [BR:
lja03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
130733904
Prokaryotic type
130733904
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
TraG-D_C
Motif
Other DBs
NCBI-GeneID:
130733904
NCBI-ProteinID:
XP_057442177
LinkDB
All DBs
Position
1:17262540..17266801
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AA seq
498 aa
AA seq
DB search
MATFLAMLFTSPLPFSFSPTRNPNTPLLLLPPTLFRCLCSSTHSPSPSLSHDKWEPFLKK
TVVMRVGYVGTDYRGLQIQRDEHRLSTIEKELETAIYKAGGIRDSNFGDLDKVKWGRSSR
TDKGVHSLATMISFKMEIPEDAWKEDRDGVVLANRINIYLPNTIRVFGILPSKKRFDPRR
ECNLRKYSYLLPADIIGIQSHFSEDEIDFHISEFNSLLSAFEGEHPFHNYTVRSKYRKKH
HARKSPGNGIMSNKTGSSTLASACESESEESDVDDFVSTTLGDKDQSHESSESSESNDFS
HQNSSLVVRARWLYEPDEADRLNVSHFRKISQCSCGKLQRLLGKDYVEIKIWGDSFMLHQ
IRKMVGTAVAVKRNLIPRDILSLSLIKFTRIVLPLAPPEVLILRGNTFSMRSSAGKFIRP
EMVSLVESEPILNEVEEFYTSVMLPELSKFLDSSKSPWVEWVERLDKYSSFADAELDEVR
MAWRTWKENFRAKSASDA
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggccacttttcttgcaatgctgttcacttctcctctgccattctcattctccccaacc
cgaaaccccaacaccccacttctccttctacctccaacactgttcagatgcttatgttct
tccacccattccccttccccttctctctcccacgacaaatgggaaccttttctcaagaaa
acggttgtaatgagagtcggatatgttggaaccgattatagaggtctgcaaattcaacgg
gatgaacacagattatccactattgagaaagaacttgaaaccgccatctacaaggctggt
ggaatccgcgatagtaactttggggacttggacaaggtgaaatggggtcgaagtagcaga
actgataaaggagttcactctctggctacaatgatatcctttaagatggaaatccctgag
gacgcatggaaagaagatagggatggcgttgtgcttgcaaaccgcattaacatttacctt
cctaatactatccgagtttttggcatattgccttcaaagaagagatttgatccaagaaga
gagtgcaacctgcggaaatattcttaccttctccctgctgacataataggaatccagagt
cattttagtgaggatgaaattgattttcatatttcagaattcaacagtttacttagtgcg
tttgagggagagcatccgttccacaattacactgttcgttcgaagtacaggaaaaaacat
catgctaggaaatccccaggaaatggtatcatgtcaaacaaaacaggatcatctactttg
gcatcagcttgtgagtcagagagtgaggaaagcgacgttgatgattttgtgtcaaccact
ttaggtgataaagatcagagccacgagtcttcagagtctagtgaatctaatgattttagt
catcaaaactctagtttagtagttcgtgcaagatggctctatgaaccagatgaggcagat
agattaaatgtttcccatttcagaaagatttcccaatgttcatgtgggaaattgcaaaga
ttacttggaaaggattatgttgagatcaagatatggggggattccttcatgttacatcaa
atacggaaaatggttgggactgctgttgctgtgaagcgcaatttaatcccaagagacatc
ctttcattgtcactcatcaagtttacacgaattgtcctccccctcgccccgccagaagtt
ttgattttgaggggaaacactttcagtatgagatcaagtgctgggaagtttataaggcct
gaaatggtgtctctggttgaatcagagccgattctcaatgaagttgaagagttctacaca
tctgtcatgttgcctgaactgtcaaagttcctagactcgtcgaagtctccttgggtggaa
tgggttgagagattggacaagtattctagctttgcagatgctgaattggatgaagtcaga
atggcttggagaacatggaaggaaaatttcagggcaaaatcagcatcagatgcatag
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