Lotus japonicus: 130734428
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Entry
130734428 CDS
T04348
Name
(RefSeq) cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
lja
Lotus japonicus
Pathway
lja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130734428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130734428
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
130734428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
EIF3I
WD40_Gbeta
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Ge1_WD40
Cytochrom_D1
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_NWD2_C
eIF2A
Beta-prop_IFT122_1st
Beta-prop_SCAP
Tricorn_2nd
Beta-prop_VPS8
Tricorn_N
Motif
Other DBs
NCBI-GeneID:
130734428
NCBI-ProteinID:
XP_057442872
LinkDB
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Position
1:46671903..46679510
Genome browser
AA seq
434 aa
AA seq
DB search
MDNNSNSDQIVLDGKLYRLLNSLIVAHLRDNNLTQAATAVASATMSPLNVEAPPNRLLEL
FAKGLAVEKDDVSRKTSSSPFRDLGASFPVPRPGATAIDFSFVPDIKGSSKSFPKHETRH
LSEHKNIVRCAKFSPDGRFVATGSADTSIKLFEVSKIKQMLLPEAKDGPVRSVIRTYYDH
IQPINDLDFHPQGTILISGAKDQTIKFFDISKTNAKRSSRVIQDTHNVRSVSFHPSGDFL
LAGTDHAIPHLYDINTFQCYLSANLLDISPNGAINQVRYSSTGAMYVTACKDGAIRLWDG
ITANCVRTIIGAHGTAEATSAIFTRDQRFVLSCGKDSTIKLWEVASGRLVKQYLGATHTQ
LRCQAMFNETEEFILSVDEFSNEIVIWDAITSEKVAKWPSNHVGAPRWLEHSPVESAFIS
CGTDRSVRFWKENL
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggataacaacagtaactcagaccaaattgtactcgatggcaaactctacagactcctc
aattctctgatcgtcgctcatcttcgtgacaacaatctcactcaggctgcaactgctgtt
gcttcagcaaccatgtcaccactgaatgtagaagcacctcccaacaggcttcttgagctc
tttgctaagggtcttgcagtggaaaaagatgatgtgtcaagaaagacttcatcttctccc
ttccgcgatttgggtgcatcattcccagtgcctcgtcctggcgcaacagccattgatttc
agctttgtgccagatataaaaggttcatccaagagcttcccaaagcatgagacacgacat
ctttcagaacacaagaatattgtcagatgtgctaagtttagtcctgatggaaggtttgtt
gccactggaagtgcagatacatcaataaagctatttgaggtttcaaagatcaagcagatg
ttgcttcctgaagcaaaggatggtcctgtgcggtccgtcatacgaacatattatgaccat
atacaaccaataaatgatttggattttcatccgcaaggtactatcctgatttctggagcc
aaagatcaaacaataaagttttttgatatttcaaaaaccaatgcaaagagatcatccagg
gttatccaggacacacacaatgttcgctctgtttcttttcacccctctggggattttctg
ctggctgggactgatcatgcaattccacatttgtatgatataaacacctttcagtgttat
ctatcagcaaatctcctggatattagtcctaatggagccataaaccaggtcagatattct
tctacaggtgccatgtatgttacagcttgtaaagatggtgctattcggttatgggatggc
atcaccgccaattgtgtgcgcacaataattggagcacatggaacagctgaggctaccagt
gcaatttttacaagagatcaaaggtttgtcctctcctgcgggaaggattctaccataaag
ctttgggaagtcgcctctggaagattagtcaaacagtatctcggagctacacatacacag
ctaagatgccaggcaatgtttaatgagacagaagaatttattctttctgtagatgaattc
agcaatgagatcgttatctgggatgcgataacatcagaaaaagtagcaaagtggccttct
aatcatgtcggtgcaccccgctggcttgaacactcaccagtagagtctgcttttatttca
tgtggaactgataggtcagttcggttttggaaggaaaatctatag
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