Lotus japonicus: 130734485
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Entry
130734485 CDS
T04348
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lja
Lotus japonicus
Pathway
lja04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130734485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130734485
03009 Ribosome biogenesis [BR:
lja03009
]
130734485
04131 Membrane trafficking [BR:
lja04131
]
130734485
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lja04147
]
130734485
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
130734485
Ribosome biogenesis [BR:
lja03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
130734485
Membrane trafficking [BR:
lja04131
]
SNARE
SNARE associated proteins
Others
130734485
Autophagy
Aggrephagy
Other aggrephagy associated proteins
130734485
Exosome [BR:
lja04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
130734485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_2
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
Mg_chelatase
AAA_17
AAA_28
nSTAND3
ATPase_2
Parvo_NS1
AAA_18
IstB_IS21
AAA_lid_PRS2_C
ABC_tran
AAA_7
DUF815
Viral_helicase1
NB-ARC
TsaE
AAA_24
NACHT
ResIII
Zeta_toxin
Vps4_C
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
130734485
NCBI-ProteinID:
XP_057442913
LinkDB
All DBs
Position
1:complement(34046218..34052225)
Genome browser
AA seq
818 aa
AA seq
DB search
MANPTSPSPNPDKAQSSAGPKSDKKDYSTAILERKKSPNRLVVDEAINDDNSVVTLHPVT
MEKLQLFRGDTVLIKGKKRRDTICIVLTDELCDEPKIRMNKVVRANLRVRLGDVVSVHQC
PDVKYGSRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKV
IETDPGEYCIVAPDTEIFCEGEPIKREDEEKLNEVGYDDVGGVRKQMAQIRELVELPLRH
PQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNL
RKAFEEAENNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRSHVIVIGA
TNRPNSIDPALRRFGRFDREIDIGTPDEIGRLEVLRIHTKNMKLSDNVDLERVARDTHGY
VGADLASLCTEAALQCIREKMDVIDLEDETIDAEVLSSMAVTNEHFQTALGSSNPSALRE
TVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMAPSKGVLFYGPPGCGKTL
LAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQR
GSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP
LPDESSRLQIFKACLRKSPISKDVDLAALARYTQGFSGADITEICQRACKYAIREDIEKG
IEQERRKRENPEAMEEDETEEEVAEIKPAHFEESMKFARRSVSDADIRKYQVFAQTLQQS
RGIGTEFRFPDRNENTATATASDPFSSVTADGEDDLYS
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatccaacctcaccctcacccaaccctgataaggctcaatcctctgctggcccg
aaaagtgacaagaaggattattccactgcaatactagaacgcaagaagtcccctaaccgt
ctagtagttgatgaagcaattaatgatgataattcagtggttactctgcaccctgttaca
atggaaaagcttcaacttttccggggtgacacggttctgataaagggaaagaagagaagg
gacacaatatgcattgttcttactgatgaactgtgtgatgagccaaaaataaggatgaat
aaggttgttcgggctaatcttcgagtgcggcttggagatgttgtctctgttcatcaatgt
cctgatgtcaagtatgggagtcgagttcacatccttccaattgatgatactattgagggt
gtcactggcaacttgtttgatgcatatctaaagccatattttctggagtcataccggcca
gtgaggaaaggggacttgttcctcgttaggggcgggatgcgaagcgttgaattcaaagta
atagagactgatcctggagaatactgtattgtggcacctgatactgaaatcttctgtgag
ggggaacccatcaaaagggaagatgaggagaaattgaatgaagttggctatgatgatgtt
ggtggtgttaggaagcaaatggcgcaaattcgagagcttgtagagcttccacttagacac
ccgcaactcttcaaatcaattggcgttaagcccccaaaagggatattgctttatggacca
cctggttctgggaagactctgattgcaagagcagtggctaatgagacaggtgcattcttc
tttctgattaatggacccgaaatcatgtcgaagctggccggtgagagcgagagcaatctg
aggaaggcgtttgaagaagctgaaaataactccccttccatcatttttattgatgagttg
gactcgattgctcccaagagagagaagacacacggtgaagtggagaggcgtattgtttcg
cagcttttaactctaatggatggcctcaagtctcgatcgcatgttattgtaattggagcc
acaaataggcctaatagtattgatcctgctctcagaaggttcggaaggtttgatcgggag
attgacatcggcacaccggacgaaattggaaggttggaggttcttagaattcatacaaag
aatatgaaactttcagataatgttgatcttgaaagagtagctagagatacccatggttat
gttggagcagatcttgcttctctttgcacagaggctgcactgcagtgtatccgggagaaa
atggatgtgattgacttagaggatgaaacaattgatgccgaggtgttgagttccatggct
gtgaccaacgaacacttccaaactgctttaggttcttcaaacccatctgccctgcgcgaa
acagttgtggaggttccaaatgtttcatgggatgatattggaggcttagagaatgtcaaa
agggagcttcaagagactgttcaatacccagtggaacatcctgaaaagtttgagaaattc
ggcatggcaccttccaaaggtgttctcttctatggacctcctggctgtggtaaaaccctg
ttagcaaaagcaattgctaatgaatgccaagccaacttcataagtgtcaagggccctgag
ttgctgacaatgtggtttggtgaaagcgaggccaacgttcgcgaaatatttgataaggcc
cggggatcagctccatgtgtgcttttctttgatgaacttgactcaattgcaacccagcga
ggcagttctgtaggggatgctggcggtgctgcagatagggtgttgaaccaactattaaca
gaaatggatggtatgactgctaagaaaacggttttcatcatcggcgcaacaaacagacca
gacatcatagaccctgcattgctcaggccgggacgattggaccaactgatttacattcct
ttaccggatgaaagttcacgccttcaaatcttcaaggcgtgtttgaggaagtcgccaatc
tctaaggatgttgacctggctgctctggcccgttacactcagggatttagtggtgctgat
attactgaaatttgtcaacgagcttgcaaatatgccatcagagaagatattgaaaagggt
atagagcaggaaagaagaaaaagagagaacccagaagccatggaagaagatgagactgaa
gaggaggtagctgagataaaaccagctcactttgaagagtcaatgaagtttgctcgccgg
agtgtcagtgatgctgacatcaggaaataccaggtgtttgctcagaccttgcaacagtct
cgtggaatcggaacggagtttcggtttcctgaccgaaatgagaacactgcaacagcaaca
gcctctgatcctttctcgtctgttaccgcagatggagaggatgatctctacagttaa
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