Lotus japonicus: 130737085
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Entry
130737085 CDS
T04348
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4 isoform X1
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
lja
Lotus japonicus
Pathway
lja03022
Basal transcription factors
lja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130737085
09124 Replication and repair
03420 Nucleotide excision repair
130737085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130737085
03400 DNA repair and recombination proteins [BR:
lja03400
]
130737085
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
130737085
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
130737085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Rubredoxin
Motif
Other DBs
NCBI-GeneID:
130737085
NCBI-ProteinID:
XP_057444841
LinkDB
All DBs
Position
1:complement(62822089..62828941)
Genome browser
AA seq
294 aa
AA seq
DB search
MPSAPSKLYADDVSLLVVTLDTNPFFWSTFSSPFSDFLSQVLAFLNSILLLGQLNQVVVI
ATGCNSCGYVYDSASDKNHASTTGTMPALYSNLLRNLEQFVARDQQLAAANHAPGTVPSS
LLSGSLSMALCYIQRAFRSGPMHPQPRILCLHGSADGPEQYVAIMNAIFSAQHSTVPIDS
CYIGSNNSAFLQQASYITGGIYYRPPQLDGLFQYLSTVFATDLHSRAFLRLPKSVGVDFR
ASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQSDAASAASRKRKA
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgccttccgctccttcaaagctctacgcagatgatgttagccttctcgtcgtcacgctt
gacaccaaccctttcttctggagcactttctcctccccgttctccgatttcctctctcag
gtgctcgcttttctcaactcgatcctcctcctcggtcagcttaaccaggtcgtcgtcatc
gccaccgggtgcaattcttgcggctacgtttacgattccgcttccgataagaaccatgct
tccacaaccggcaccatgccggcgctatattccaatctgctccgcaaccttgaacagttt
gttgctagggaccagcaattagccgcggcgaatcatgcaccgggaaccgttccgtcttca
ctgttatcagggtcattgtccatggctctctgttatatacagagagcttttcgttcaggg
ccgatgcatcctcaacctcggattctatgtttgcacggatctgctgatggaccagagcag
tatgtggcaatcatgaatgcaatattttctgcgcaacattctacagttcctatagattct
tgttatattggttcaaacaattcagcgttccttcagcaggcttcatacattaccggtggc
atatattacaggcctccccaactggatgggctttttcaatatctttcaacagtttttgca
actgatttgcactctcgtgcctttttacggcttcctaagtctgtaggtgtggactttcgt
gcctcgtgcttctgccataagcaaacaattgacatgggttatgtatgttctgtatgctta
tccatattctgcgagcatcacgataagtgttcaacctgtgggtctgtatttggccaggct
caatctgatgctgcctcagcagccagtcgtaaaagaaaggcttga
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