Lotus japonicus: 130738175
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Entry
130738175 CDS
T04348
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lja
Lotus japonicus
Pathway
lja03022
Basal transcription factors
lja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130738175
09124 Replication and repair
03420 Nucleotide excision repair
130738175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130738175
03036 Chromosome and associated proteins [BR:
lja03036
]
130738175
03400 DNA repair and recombination proteins [BR:
lja03400
]
130738175
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130738175
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
130738175
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
130738175
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
130738175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
NAMPT_N
AAA_11
Motif
Other DBs
NCBI-GeneID:
130738175
NCBI-ProteinID:
XP_057446088
LinkDB
All DBs
Position
2:complement(47990985..47997817)
Genome browser
AA seq
759 aa
AA seq
DB search
MKFQIEDVTIYFPYDNIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV
LSKPQSPLKLLYCTRTVHEMEKTLAELRLLHDYQTRFLGPAATILALGLSSRKNLCVNSR
VLAAENRDSVDAGCRKLTASWVRAVAAENPAVPSCEFFEQYERAGSGAVLPPGVYTLQDL
RAFGKEKGWCPYYLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKECVVVFDEAHNID
NVCIEALSVSVRRQTIEGARRNLTRMRQEIDKFKATDAGRLRAEYNRLVEGLALRGDLPA
TDGWLANPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYFEGRMETENVEKESPVGFVTS
ILNHAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQSICDFATLVGTYARGFSIIIEP
FDERMPHIPDPVLQLCCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMASVVPDGIVCFFV
SYSYMDGIVNSWNENGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAIFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
LRKMAQPYDKTGGTGRKTLLSQEDLEKMMVEGSMNDILY
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaagttccaaatcgaggacgtaacaatatacttcccctacgacaacatctacccagaa
caatactcctacatggtcgaactcaagcgagccctcgacgccaaaggccactgcctcctc
gagatgccaaccggcaccggcaaaaccatcgcacttctctccctcatcaccagctacgtc
ctctccaaaccccaatcgccgttgaagcttctctactgcacccgcacggttcacgagatg
gagaaaaccctcgccgagcttcggctccttcatgattaccagacgcgattcctcgggcct
gcggcgactattcttgcgttgggtctctcgtctcggaagaatctctgtgttaattcccgg
gttcttgctgcggagaatcgggattcggttgatgctgggtgccggaaattgacggctagc
tgggttagggcggttgctgcggagaatcccgcggtgccgagttgtgagttctttgagcag
tatgagagagctgggtctggtgcggttttgccgcctggggtttacactttgcaggatctg
agagcgtttgggaaggagaagggctggtgtccttactatctggcacggcatatggtgcag
tttgccaatgtggtggtgtatagctatcagtatttgcttgatccgaaggtggctggcata
atatctaaggaaatgcagaaagaatgtgttgttgtatttgatgaagctcataatatcgat
aatgtctgtattgaagcgcttagtgtgagtgtgaggaggcagactattgaaggtgctaga
agaaatttaacaaggatgcgccaagaaattgacaagttcaaggccactgatgcaggtaga
ctccgtgctgaatacaaccggcttgtcgagggtttggcactaagaggagacctgcctgcc
acggatggatggcttgcaaatccagccttgcctgatgatatactaaaggaggctgtacct
ggaaatattcgtcgggctgagcattttattcatgttttacgtagattagttcaatacttt
gaggggcgcatggaaacagagaatgtggagaaggaaagccctgttggctttgttacctct
attcttaaccatgctggaattgaccaaaagacactgaagttttgttatgatcggcttcat
tcattaatgatgacattggaaattacagatactgatgagttccttcatatccaaagtata
tgtgattttgccacacttgttggtacatatgctcgtggtttttctattataattgaacct
tttgatgagagaatgccacatattcctgatcctgtattgcagctttgttgccatgatgct
tctcttgccataaaaccagtttttgagcgatttcagtcagttgttattacatctggcaca
ctaagccctatagatttgtaccctcgcctgttgaatttcaaccctgttgtcagtcgaagt
tttacaatgtccttgaccagagattgcatatgccctatggtgcttacccgtggcagtgat
cagcttccagtcagcaccaaatttgatatgagaagtgatctaggtgtagtgaggaattat
ggacggctcttattggagatggcttcagttgttccagatggtattgtgtgtttctttgtc
agttactcatatatggatgggatagtcaatagctggaatgaaaatggaattttaaaggaa
ataatgcagcataagcttgtctttattgagactcaggatgtggtagaaactacgttggct
cttgacaactaccgcaaggcttgtgattgtggaagaggtgctatatttttttctgttgct
agaggaaaggttgctgaaggtatagattttgatcgacattatggcagactagtaatcatg
tttggtgttccttttcaatacacattaagcaagattttgcttgcacgcttggaatacctc
cgggatacttttcaaattaaggaaggagattttctgacttttgatgctttaagacaagct
gctcagtgtgtgggtcgtgtaatacgttcaaaggctgattatgggatgatgatttttgcg
gacaaaaggtatagtcgtcatgacaaacggtccaaattgccgggttggatactctctcat
ttacgtgatgcgcacctaaacttgagcactgacatggctttgcatatagcgcgtgagttc
ctcaggaaaatggctcaaccatatgataagactggtggcactggcaggaaaaccttgttg
tcccaggaagacttggagaagatgatggttgagggaagcatgaatgatattttgtattga
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