Lotus japonicus: 130738250
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Entry
130738250 CDS
T04348
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
lja
Lotus japonicus
Pathway
lja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130738250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130738250
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
130738250
U7-dependent histone pre-mRNA processing factors
130738250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
BPS
Motif
Other DBs
NCBI-GeneID:
130738250
NCBI-ProteinID:
XP_057446178
LinkDB
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Position
2:51446126..51455351
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AA seq
740 aa
AA seq
DB search
MGTSVQVKPLCGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSRVASTIDAVLL
SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQFLSRKQVSEFDLFTLDDID
SAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKE
RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRSGGNVLLPIDTAG
RVLELILMLESYWAEENLVYPIYFLSYVSSSTIDYVKSFLEWMSDTIAKSFEQTRENIFL
LKYITLLVNKTELDNVPDGPKVVLASMASLEAGFSHDIFVEWGSDVKNLVLFTEKGQFAT
LARMLQADPPPKAVKVTVSKRVPLVGDELIAYEEEQNRIKKEEALKASLIKAEELKASHG
ADSNTSDPMVIDTGNNLVAPEVAGPRGGGYRDIFVDGFVPPSTSVAPMFPCYENTSEWDD
FGEVINPDDYVIKDEDMDQTAMHVGGDINGKLDEGAASLILDTKPSKVISDERTVQVRCS
LVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKNVCPHVYAPQIEET
IDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAEVGKAENDTLSLLPVSGATPPHK
SVLVGDLKLADFKQFLSSKGVQVEFAGGALRCGEYVTVRKVGDASQKGAGSGTQQIIIEG
PLCEDYYKIREYLYSQFYLL
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgggaacatcagtgcaggtaaagccactgtgtggagtgtacaacgagaaccctctctcg
tacttggtctccattgatggcttcaacttcctcatcgactgtggttggaacgaccacttc
gacccttcccttcttcaacccctctccagggtagcatcaactatagatgctgtcttgctt
tcgcacccggatacgcttcaccttggtgccctcccatatgctatgaagcagcttggactc
tctgcgcctgttttttcaactgagcctgtctacagattgggccttctcactatgtatgac
cagttcctctcaagaaagcaagtgtcggagtttgatctgttcacgctagatgatattgat
tctgctttccaaagtgtaacaaggctaacatactctcagaatcatcatctctcaggcaag
ggagagggaattgtgattgcacctcatgttgctgggcatcttttgggaggtacgatatgg
aaaattacaaaggatggtgaggacgtcatatatgctgttgattttaatcatcggaaagaa
aggcatttgaatggaactgttctaggttcttttgtgcggccagcagttctaataactgat
gcttataatgctttgaacaatcagccttacagacgccaaaaggacaaagaatttggagat
atcttaaagaagactcttaggtcaggtggcaatgtattgctccctattgacactgcagga
cgggtgttggaacttattctgatgctagaatcgtattgggctgaagaaaacttggtctac
cccatatattttctttcatatgtttcatccagcacaattgattatgtaaagagtttcctt
gagtggatgagtgataccattgcaaagtcttttgaacaaacgcgtgaaaatatatttctt
ttgaagtatattacacttctggttaacaagactgagcttgataatgttccagatggtcca
aaggttgttctagcatccatggcaagtttggaagcaggtttttctcatgatatatttgtt
gagtggggcagtgatgtaaaaaatctcgtgctttttactgaaaaaggccagtttgccaca
ctagctcgtatgcttcaggctgatccacctccaaaagctgtcaaagtcactgtgtccaag
cgtgttcctttggttggcgatgagctaattgcctatgaggaagagcaaaatcgaataaag
aaagaagaagctttaaaagccagtcttataaaggcggaagaattgaaagcatctcatggg
gctgatagtaatacaagtgatccaatggtcattgatactggcaataatcttgtagcacca
gaagtggctggtccacgaggtggaggataccgggacatatttgttgatggatttgttccc
ccttcaacaagtgttgccccaatgtttccctgttatgaaaatacgtctgagtgggatgat
tttggtgaagtcataaatccagatgattatgtaattaaggacgaagacatggaccagaca
gcaatgcatgtaggaggtgatataaatggaaaactagatgaaggtgctgcgagtttaata
cttgatacaaagccatcaaaagtcatatctgatgaaaggactgtgcaagtcaggtgttcc
ttggtatacatggactttgaaggccgttcagatggaagatccattaaaaatattctctcc
catgtggctcccctgaagctggttttggtgcatgggtcagctgaagctacggagcatctg
aagcagcattgcctgaagaatgtgtgtcctcacgtttatgctccccaaattgaagagaca
attgatgttacctctgatttatgtgcttataaggttcaactatctgagaagctaatgagt
aatgtactcttcaagaagctgggagattatgaagtagcttgggttgatgctgaagtaggg
aaagcagaaaatgacacgctctcgctgctgcctgtttccggagcaactcctccgcataaa
tctgttcttgttggtgatttgaaattggcagatttcaagcagttcctctccagcaagggt
gttcaggtggaatttgctggtggggctttgcgttgcggtgaatatgtaactgtccggaag
gttggggatgcaagtcagaagggtgctggttctggtacacagcaaattattattgaaggc
cccctgtgtgaagattactataaaattcgcgaatatctctattcacagttttatttgctt
tag
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