Lotus japonicus: 130738279
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Entry
130738279 CDS
T04348
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 isoform X1
KO
K28108
shortage in chiasmata 1
Organism
lja
Lotus japonicus
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lja03036
]
130738279
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Meiosis-specific proteins
Others
130738279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3014
Motif
Other DBs
NCBI-GeneID:
130738279
NCBI-ProteinID:
XP_057446217
LinkDB
All DBs
Position
2:52221210..52231992
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AA seq
1621 aa
AA seq
DB search
MRTRFLNNDYFTLPPPSHRHHETLPFLHLPVPRLSTPPPSSVHNHLRFHPPLRLSLLTDP
LPIDAALSTFLSDVLPHRIHLESYNLSVPDLDTNREHQAEVIFEDHLPEADIEFLKESAT
IARSDKSDTVREPIQFETPELDTLLENECFTENERMQMLSQTPDVENSLEMVKPEVLWQY
PYEALESVSKVEDVVSEYLKGEKEYSLEDNISMQHLPHIEQNIFLVLEVDEESLGIPSCL
SMVEIVDSYFENIRPQNFDERYQSVTEGKELLGSEEQNMMKFFSDDCVSKKSLVLSDLSP
DNDFINMLETEHVDWNIALQGKGQVDSALLANLVTFQEYIFLDEDLIQTLDAFYDTKASV
DQERSDQMFMKEFNFKSFDELVVSNEMALIDDRFKSLPVPVISDYEKLITPHDIIGELFS
NMKTRPLSASDGIYLNWDLLDEDKCNYKMSNWYLNICAKIDLKNQDIAGNSFDNRNVVFD
LVFCCDIGECDIVQSVELKKLLSDCIPLPDNLPEEFTSSNLLQHGSSKQGCREQLPCREQ
LPERDAERASLFFKSMSEISNLEYFLNPKYVTDKANCNFAVESTNANVNIPKDTSTEFKA
GLQSHGWHTVLHRIKLSDNIVAITAYFEKCYLAILQSDTELTKMYNPDVDYFKLLSFPKR
KLFEYHVNGNNMAFIALSAIKQAAWYLCFYGLNPACLYVDKLCQNLDYLKSRLGFLQSLI
KYENRKVDGSYTIAHPSLTIVKEILQSSIKSNSLKALIVAEEVFWWSLKNLLLSLGLSCS
KLNDSYRNQPYASNLPEDTNTKMKELLNSDCLLVSHKHVSLLFPFNKFGIILEYGGPYGS
SRISELSPNSVGKPHLHFLTIDLDDHAASKALCEGVETPPNTGMLLESETPLIFYHKESM
ANQKLERLLNFCPVEQSYGIESSKVAPETDNFVPVITAAQSEHGNQSLEPFSGSVIIVNT
QNIDKEMIVSRRSSYQVILAMEKGGVQVVERDLDLPVDIIISSGICLAWYDSRNLGKKGT
PATEASSSLPLCIDNIATDVLTLLSFYFRGSFLVFEGEFDFLSIVMESSDGLYAAAASLG
IDLQIFFSYSPELSNEVILSCIKNAAKLTRGLYPKMPDSVTLAESFLTQFPGINPLTAHS
ILSSGAMLNEFLECSHEQRMRVLENYDVPEESLSLFSVFCKYGEREDSKSIMTDCSSSVS
SGPDSDRCHRYQVDNKRKRKNPISSHQKDEQYFDELLQFKTLNQEVEAIPDSSTLPKPFD
LGMSKAAGRSSDLEKASLCMSDFFDQKQPITASTMKNPSRVYPSSRNSKAPRISEQVEQP
CLSFKNNELVQNEILDIDLMGKSMNWNSLSSSEKLHEDIRGEVVDLTDSPLLDESFPMSD
SMYFPNLVTDTEKDQLRKSKIARRLSFNNRSHPATNSWEIWKSLQDTAREVDDYPEPDFG
KDVFPLDFKPPENVGLTQVAMTNLQGLHFQDRMSHLSETPLSRARRSASPLRHSPWTIDF
LNKVKEKSKLRQKSLSYQKSRPCFGYQGNVSKVPKRRSPSIIEFFKYQPGRTPGNFPEQK
RQKQSGQSSNSVKKGRYSTCVPSWTPDDKRSTKALTFGKKESGSQTKLVWSDKQRFQYQT
Q
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atgcgaactcgctttctcaacaacgattacttcaccctccctcctccgtctcaccgccac
cacgaaaccctccccttcctccacctccctgtccctcgcctctccacgccgcctccctcc
tccgtccacaaccacctccgcttccatccccctctccgcctctcactcctcaccgacccc
ttgccgatcgacgccgcactctccaccttcctctccgatgtcctccctcaccgaatccac
ctcgaatcgtacaacctctcagttccggacctagacacgaatcgcgagcatcaagcagag
gttatctttgaagatcatctccctgaagctgatattgaatttctgaaagagagtgcaacg
attgctcgaagtgataagagcgatactgttcgggaacctattcaattcgaaacacctgag
ctagacacactcttggaaaatgaatgcttcactgagaacgagaggatgcaaatgctgtct
caaactcctgacgttgaaaatagcctggaaatggtcaagcctgaggtattatggcagtac
ccttatgaggctctggaatcagtatctaaggttgaagatgttgtttcggagtacctgaaa
ggggagaaagaatattctttagaagataatatctctatgcagcaccttccacacattgaa
caaaacatatttcttgttctggaagtggatgaggaaagtttgggaattccctcgtgctta
tctatggtagaaattgttgattcatattttgaaaatatcagacctcaaaattttgatgaa
cgatatcaatcagttacagagggcaaggagcttttgggttctgaggagcaaaacatgatg
aagtttttctcagatgactgtgtgtcaaaaaagagcttggtgttatccgatttgtcccct
gacaatgattttataaacatgttggaaactgaacatgttgattggaatattgccctgcaa
ggaaaagggcaggtcgatagtgctttgttagcaaatctcgttaccttccaggaatacatc
ttccttgatgaggacttaattcaaacccttgatgctttctatgacacgaaagcatcggtt
gatcaagaaagaagtgaccagatgttcatgaaagaatttaacttcaagagttttgatgaa
ttggttgttagtaatgagatggctctaatagatgacaggttcaaatcactgcctgtacct
gttatctctgattatgaaaagttgataactccacatgatatcattggagaactattttcc
aacatgaagacgcggcctctatctgcatctgatggcatttacttaaactgggatctactt
gatgaagataaatgcaattacaaaatgtctaattggtatctgaacatatgcgccaagata
gatctgaaaaaccaagacattgcgggaaattcttttgacaacagaaatgtggtttttgat
ctagttttctgttgtgatataggtgaatgcgacattgtacaaagtgtagagttgaagaag
ttgctttctgattgcattcctctgcctgacaatctgcctgaagaatttacttcaagcaat
ctattacaacatggatcttctaaacaaggatgtcgagagcaattaccgtgtcgagagcaa
ttaccagaaagggatgcagagagggcttcattattttttaagtctatgtcagaaatcagc
aatcttgagtatttcttaaaccctaaatatgtgactgataaggcgaactgtaattttgca
gtagagtccaccaatgctaatgttaatattccaaaagatacatccaccgaatttaaggct
ggtctacagtcacacggatggcacactgttttgcatagaattaagttgtccgacaatatt
gtggccattacagcatattttgaaaaatgctatctagccattttgcagagtgatacagag
ctgacaaagatgtataacccagatgtagattattttaaattactgagctttccaaagcgc
aagctgtttgaataccatgtgaatggaaacaatatggcgtttattgcgctaagtgcaatt
aaacaggctgcttggtacttatgtttttatggtctcaatccagcatgcttgtatgtagac
aaattatgtcaaaacttggattacttgaaatcaaggttaggcttcctccaatctttgatc
aaatatgaaaacagaaaggtggacggcagttataccatagcacatccatcactaacaatt
gtcaaggaaattttacagtcaagcatcaaaagtaatagtttgaaagctctaattgtggct
gaagaagtattctggtggtcattgaaaaatctccttctttccttggggttatcgtgcagt
aaactaaatgattcttacagaaatcagccctatgcgagtaatctgcctgaggacacaaat
actaaaatgaaggaacttctgaattcagactgcttgctggtttcacataagcatgtttct
ctgttgtttccattcaacaaatttggcattatcctggaatatggtggtccatatggctca
tctagaatatctgaactttctccaaactcggttggaaagcctcatcttcactttttgacg
attgatttggatgaccatgctgcttccaaagcactgtgtgagggcgttgaaaccccccca
aacactggaatgttactggaaagtgagactccccttattttctatcacaaagaaagtatg
gcaaatcagaagttagagagactgctgaacttttgtccagtggaacaaagctatggtata
gaatcttcaaaggttgcacctgaaacagacaattttgtgccagtaattactgcagcgcaa
tctgagcatggaaatcagagtttggagcctttttctggatcagttatcatcgtgaatact
caaaacatagataaggagatgatagtgtctagaagaagctcttaccaagtaattcttgca
atggagaaaggaggagttcaagttgttgaacgtgatttagatttgccggtggatattata
ataagttctggaatttgcttggcatggtatgatagcagaaacctggggaagaaaggaact
ccagctactgaagcatcttcaagtttgcctctatgtattgacaatattgcaacagatgtt
ctgacattgcttagtttttacttccgtggctcctttctggtctttgagggagaatttgac
tttctttcaattgtaatggagtcctcagatggactttatgctgcagcagcaagcctggga
attgatttgcagatcttcttctcttactctcctgagttgtcaaatgaagttatcctaagc
tgcattaagaatgctgccaaattgacaaggggtctgtatcctaaaatgcccgattctgta
actctagcagagtcatttcttacgcaatttcctggaataaatcctttaacagcacactct
atactatcttcaggggctatgcttaatgagtttcttgagtgttcacatgaacaaaggatg
cgtgttttagaaaactatgacgttccagaagaaagtctttctctatttagtgttttctgc
aaatatggggaacgggaggattcaaaatccataatgacagactgctcgtcctcagtatct
tctggtccagactcagataggtgccatcgatatcaagttgacaacaaaagaaaaagaaaa
aaccctataagtagtcatcagaaagatgaacaatactttgatgagttgttgcaattcaag
acattaaaccaagaagttgaggctatcccagattcctctactttgccaaaaccttttgat
cttggaatgtcaaaagctgctgggagatccagtgacttggaaaaggctagtttgtgcatg
agtgattttttcgatcagaagcaaccaatcactgcgagtacaatgaaaaacccttccaga
gtctacccatcttcacggaacagcaaagctccccgaatatcagagcaggtggaacagcca
tgtttatctttcaaaaataatgagttggttcaaaatgaaatactggatattgacttgatg
gggaaaagcatgaattggaatagccttagtagttctgagaagctgcatgaggacattaga
ggtgaggtggttgacttgactgatagtcccctattagatgaaagcttccccatgtctgac
tccatgtacttcccaaatttggtgactgatacagagaaggatcagctaagaaagagcaaa
attgcaagaagattgtcatttaataatagaagtcaccctgcaaccaactcatgggaaata
tggaaatctttacaagatacagctagagaagttgacgactatcccgaaccagattttgga
aaagatgtatttcctcttgatttcaagcctcctgaaaacgttggcttaactcaggtagct
atgacaaacttacaaggattacacttccaggacagaatgtcacatttgagcgagactcca
ctctcccgtgcccgccggtcagctagtccattgaggcattcaccttggactattgacttt
ctcaataaagtaaaagaaaagagcaaactgcgtcaaaaatcgttatcatatcagaagtct
cgcccttgctttgggtaccaggggaatgtgtcgaaagttcctaagagaagaagtccttct
ataattgagttctttaagtatcaacctggaagaacacctggaaattttccggaacagaaa
agacagaagcaatctggacaatcttcaaactctgtcaagaaaggaagatattccacttgc
gtaccttcatggactcctgatgacaagagatcaaccaaggcactgacttttgggaagaaa
gaaagtggaagccaaactaagctggtctggagtgacaaacagaggttccagtatcagacg
caataa
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