Lotus japonicus: 130738607
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Entry
130738607 CDS
T04348
Name
(RefSeq) SWI/SNF complex subunit SWI3C
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lja
Lotus japonicus
Pathway
lja03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130738607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130738607
03036 Chromosome and associated proteins [BR:
lja03036
]
130738607
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130738607
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130738607
PBAF complex
130738607
GBAF(ncBAF) complex
130738607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
130738607
NCBI-ProteinID:
XP_057446659
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All DBs
Position
1:64650558..64664780
Genome browser
AA seq
792 aa
AA seq
DB search
MPASPSENRTKWRKRKRDSQISRRKHHEDDDDDDEENPNAAEDDHHDYDDSEDHNHNHNH
PNSQPHHHEMEVLSDHPVQISVFPLVVKRTVNRPHSSVAAIVALERAIELGDSGSNSNKG
QVQNPTPLLENVSYGQLQALSAVPSDSSAFDQDRGDSSCVITPPPILEGRGVSKRFGNKA
LVLPMHSDWFSPATVHRLERQAVPHFFSGKSADHTPEKYMECRNCIVALYMEDLGKRITV
ADCQGLVVGVDQEDLARIVRFLDHWGIINYCARTPELPNAVSSLKEDTGGEVRVPSEALK
SIDSLIKFDNPKCKLKADEIYSSLTMHNADSPDLDDRIREHLSENHCNYCSRPLPVVYYQ
SQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDWESWTDQETLLLLEAMEIY
NENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPSMSLSSSVMNRDDNGRLHHHL
NGDSAGPIHQSRESDSRLPFANSGNPVMALVSFLASAVGPRVAASCAHAALAVLSEDGSG
STSQTEAPGHDNRTNAESVHARDGGPHGETANSINHNEDKAKMRSTRGQSEGRTTPLSAE
KVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKE
CEQVERAKQRFGAERSRIISAHFGTAGATPPMNASGVGPSVASNNGNNRQQIASPSQPSI
SGYGNSQPVHPHMSFAPRPSMFGLGQRLPLSMIQQSQSAASSTGMFNAPSNVQSSTNHPL
LRPVSGTNSGLG
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttccccttcagaaaaccgaaccaaatggaggaagcggaagcgggactcccaa
atcagccgccggaagcaccacgaggacgacgacgacgacgacgaggaaaaccccaacgcg
gcggaggacgaccaccacgactacgacgactccgaggaccacaaccacaaccacaaccac
cctaattcccaaccgcaccaccacgagatggaggttctgtcagatcacccggtccagatt
tcggtgttcccgttggtggtgaagcgcaccgtcaaccgccctcactcctccgtcgccgca
atcgtggctcttgaacgagctattgagttgggagatagtggcagcaacagcaacaagggt
caggtgcagaaccctactccgttgctggagaatgtgtcatacggccagcttcaggcgctc
tccgccgtgccctctgatagctccgctttcgatcaggaccgcggtgattcctcttgtgtc
atcactccaccccctattttggaaggccgtggcgtttctaagcgctttggaaacaaggct
cttgtgctcccaatgcattcagattggttttcaccggccaccgtgcataggctagagaga
caggcggtgccccatttcttttctgggaaatcggcggatcatacgccagagaagtacatg
gaatgtaggaattgcattgttgcactgtacatggaggatctggggaagaggattactgtc
gctgactgccaaggattggtggttggggttgatcaagaagatctggctagaattgtccgg
tttcttgatcactggggaattatcaattactgtgctcggacgcctgagcttccgaatgct
gtgtccagcctgaaggaagacacgggtggagaggtccgtgtgccgtctgaggctttgaaa
tccattgatagtttgatcaaatttgacaatccgaagtgtaagctcaaagcagatgaaatt
tattcatcattgacaatgcataatgctgattcccctgatcttgacgacagaataagagag
catttgtctgaaaatcattgcaattattgctctcgtcctcttcctgtagtatactatcag
tctcaaaaagaggttgatattttactctgcactgattgctttcatgatgggagatttgtc
attggtcattcaagtatagattttatgagggtggattcaacaagagattatggtgaacta
gattgggaaagttggactgatcaagaaactttgttgctgcttgaagcaatggagatttac
aatgagaattggaatgaaattgcggagcatgttggtaccaagtcaaaagcacaatgcatt
cttcattttcttcgtctacccatggaggatggaaaattggaaaatatcaatgttccaagc
atgtctttatcatccagtgtcatgaatagagatgataatggaagattgcatcatcattta
aatggggattctgctggacccatccatcaaagccgagagtctgacagccgtctgcctttt
gcaaattctggaaatcctgttatggctctggtttcctttttagcctctgccgttggacca
agagtagctgcgtcttgtgctcatgcagcattagcagtattgtcagaggatggttctggc
agtacatcacagacagaagcaccaggacacgataataggacaaatgcagaaagcgttcat
gctagagatggtggccctcatggagaaactgcaaattcaattaatcataatgaggataag
gcaaaaatgcgtagtacacggggtcaaagtgaaggtcggacaaccccactctctgctgag
aaagttaaagatgcagctaaagcaggcctctctgcggcagcaatgaaagctaaattgttt
gctgatcacgaagaacgtgaaattcagaggttatgcgccaatatagttaatcatcagttg
aaaagactggaattgaagctgaaacagtttgcagaaattgaaacattactgatgaaagaa
tgtgaacaagtagaaagggcaaagcagaggtttggtgctgaacggtctcgcattatatcg
gcacattttggaactgcaggagccacacctccaatgaatgcatcaggtgttggtccttca
gtggctagtaataatggcaacaataggcaacaaattgcttctccctcacagcccagcatc
tcagggtatggcaacagccaaccggttcatccacatatgtcctttgccccgcgaccttca
atgtttgggttggggcaaagattgcccctgtctatgatacaacaatcacaatcagcagct
tcttcaactggcatgttcaatgctcctagtaatgtgcaatcgagtaccaatcacccattg
ttgaggcctgtgtcaggaactaactcaggtttaggttaa
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