KEGG   Lotus japonicus: 130738990
Entry
130738990         CDS       T04348                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
lja  Lotus japonicus
Pathway
lja03020  RNA polymerase
lja03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    130738990
  09124 Replication and repair
   03420 Nucleotide excision repair
    130738990
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lja03021]
    130738990
   03400 DNA repair and recombination proteins [BR:lja03400]
    130738990
Transcription machinery [BR:lja03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     130738990
  RNA polymerase III system
   RNA polymerase III
     130738990
  RNA polymerase I system
   RNA polymerase I
     130738990
DNA repair and recombination proteins [BR:lja03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      130738990
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NA-iREase1
Other DBs
NCBI-GeneID: 130738990
NCBI-ProteinID: XP_057447168
UniProt: I3SCP2
LinkDB
Position
2:67465550..67467948
AA seq 206 aa
MALTEEDITKLHRIRKTVMQMLRDRNYLVGDFEINMSRHEFKTKYGDNMKREDLTINKTK
KDGPSDQIYVFFPDEPKVGVKTMKTYTNRMNSENVFRAILVCQSNLTPFAKTCISEMSSK
FQLEVFQEAELLVNIKEHVLVPEHQILNETEKKTLLERYTVKETQLPRIQITDPVARYYG
LKRGQVVKIIRPSETAGRYITYRFVV
NT seq 621 nt   +upstreamnt  +downstreamnt
atggcgttgacggaggaggacataacgaaactccaccgtatccgcaagacggtgatgcag
atgctccgcgaccgcaactacctcgtcggcgacttcgagatcaacatgtcccgtcacgag
ttcaaaaccaagtacggcgacaacatgaagcgcgaagatctcaccatcaacaaaaccaag
aaagacggtccctccgaccagatctacgtcttcttccccgacgaacccaaagtcggcgtc
aagacaatgaaaacctacaccaaccgcatgaacagcgagaatgtcttcagggctattctt
gtttgtcaatcgaacctaaccccgtttgcgaaaacatgtatctctgaaatgtcttctaag
tttcaattggaagtgtttcaggaggcggagctgttggttaatatcaaggagcatgtgctt
gtgccggagcatcagattcttaatgagactgagaagaaaactttgcttgagagatataca
gtcaaggaaactcagctacctagaatccagataacggaccctgttgctagatattatgga
ctgaagcggggacaggtcgtcaagataatccggccaagtgagactgcaggcagatatatt
acatacagatttgttgtataa

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