Lotus japonicus: 130739205
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Entry
130739205 CDS
T04348
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130739205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130739205
03009 Ribosome biogenesis [BR:
lja03009
]
130739205
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130739205
Spliceosome [BR:
lja03041
]
Complex A
U1 snRNP components
U1 related factors
130739205
Complex B
130739205
Ribosome biogenesis [BR:
lja03009
]
Eukaryotic type
Pre-60S particles
Helicases
130739205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130739205
NCBI-ProteinID:
XP_057447434
LinkDB
All DBs
Position
2:complement(70766565..70771842)
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AA seq
750 aa
AA seq
DB search
MAATATATVGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTSSAAPPKSS
VPSSSVQVQQSSQRARSPDLKDRYDRNGGGGSNDSGSRNHQSSKEGSFSSHPNGTHATGN
VSSVKDQGASDAGAGLSPESYRRRHEITVSGDNVPPPFTSFGSTGLPPEILKEVQNAGFS
APTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFFHLKRTGNNSKMGPTVLVLSPT
RELATQIQDEAVKFGKSSRISCVCLYGGAPKGPQLRDIERGADIVVATPGRLNDILEMRR
ISLHQISYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMYTATWPKEVRKIAADLLVN
PVQVNIGNVDELVANKSITQHIEVLPPTDKHRRLEQILRSQDQGSKIIIFCSTKKMCDQL
ARNLTRQFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDF
PTGVEDYVHRIGRTGRAGATGLAYTFFAEQDAKYASDLIKVLEGANQRVPSELRDMSTRG
GGMNRSRRWGSGGRGDSGYGARNDSGYGGRGSDSGYGGRGGFGTAASGRGGGRGFDNDSQ
RNDRGRSPERGGSSWSDRFKSGDRDRSRSPDRAAPSQNTQFSFHQAMMERRGGDSDRSKS
LNRDRSRSPGPHKQERAPAVREGYSFHGSMMGQGQRDDSRKSARSPHRSSPSSPGGGRSN
NNPQKGWGGSHPSYNGEVEEGMIPEEGMIC
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggccgccacagctactgccacagtgggtccgcgatatgcaccacccgacccgactcta
cctaaaccatggaggggtcttgtggatggcaagactgggtatctttacttttggaaccct
gagactaatgttacccagtatgagaggcctacaagctccgctgccccgccaaagtcttcg
gtgcccagttcttctgtccaggttcaacaatcatctcagcgtgctcgcagtccggatttg
aaggacaggtatgatagaaatggaggtggtgggtcaaatgacagtggatcacggaaccat
cagagttccaaagagggaagttttagttctcatccaaatggaacacatgctactggaaat
gttagttctgtcaaagatcaaggggcatcagatgctggagctggactaagcccagagtct
tatcggcgtcggcatgaaataactgtttctggagataatgtgccgccaccttttacatca
tttgggtccactggcttaccaccggaaattcttaaagaggtacaaaatgctgggttctca
gcccctactccaattcaggctcagtcatggcccattgctcttcaaagcagagatatagtt
gccattgcaaaaacaggttcagggaaaactttgggatatttaatcccagcattttttcac
ctcaagcgtactggcaataactccaaaatgggtccaactgttttggtactttcaccaact
agagagttggcaacgcaaatacaagatgaagctgtgaagtttgggaaatcatctagaatt
tcttgtgtgtgtttgtatggaggagcaccaaagggtcctcagttgagagatattgaacgt
ggagcagatattgtggtagccactcctggtcgcttgaatgatattcttgagatgagaaga
ataagtcttcatcaaatctcttaccttgtgctagatgaggcagacagaatgcttgacatg
ggttttgaacctcaaattaggaagattgtgaatgaggtgcctgcacgcaggcaaactctc
atgtatactgcgacatggcctaaggaggttaggaaaattgcagctgatctgctggtcaat
cctgttcaggttaacatcggaaatgtagatgagcttgttgccaacaaatccattacccag
catattgaagtattgccaccaacagacaaacaccgtcgactggagcagattttgcggtct
caggatcaaggatccaagataattattttttgttctaccaagaaaatgtgtgatcaactt
gctcgtaatcttacgcgccagtttggagctgctgctatacacggggacaaatcccaggct
gagagggatcatgtgttgagtcagtttcgaactgggaggtctccggtgcttgtagccact
gatgttgcagctcgaggactagacattaaagacattagggtggttgtcaactatgacttt
cctactggagtggaagattatgttcataggattggaaggactgggagggctggagccact
ggtttagcttacactttctttgcggagcaggatgctaaatatgcttcagatttgatcaaa
gtcttggaaggtgcaaaccagcgtgtcccgtcagaacttcgtgatatgtcaacacggggt
ggtgggatgaacagatccagacgctggggttcaggtggacggggtgactctggatatggc
gcaaggaatgactctggatatggtggaagaggtagtgattctggatatggtggaagaggt
gggtttgggactgctgcttctggcaggggtggaggccgtggatttgacaatgattcacaa
aggaatgatcgtggtcgaagtcctgagaggggtggttctagctggagtgatcgcttcaaa
agtggtgaccgcgatcgtagtcgtagtcctgacagggctgcaccatctcaaaatactcaa
ttcagctttcaccaagcaatgatggaacgacgtggaggggatagtgatcgtagtaagagc
cttaaccgtgaccgtagtcgcagtcctggtcctcataaacaggagagggccccagcagtt
cgtgaaggttacagttttcatggatcaatgatgggacaagggcagcgtgatgacagtcgt
aaatctgcacgtagtcctcaccgaagttcaccatcctcccctggtggtggtaggtctaac
aataaccctcagaaagggtggggaggatctcatccttcttacaatggagaagtggaggaa
gggatgattcctgaagaaggaatgatatgttaa
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