Lotus japonicus: 130739509
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Entry
130739509 CDS
T04348
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130739509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130739509
03012 Translation factors [BR:
lja03012
]
130739509
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130739509
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130739509
Translation factors [BR:
lja03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
130739509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
NPHP3_N
ABC_tran
NACHT
T2SSE
ATPase_2
GSHPx
AAA_11
Motif
Other DBs
NCBI-GeneID:
130739509
NCBI-ProteinID:
XP_057447800
LinkDB
All DBs
Position
2:74450477..74464952
Genome browser
AA seq
1096 aa
AA seq
DB search
MNKRPPPPVSADLSSREFEVSSLSNQSGFPNDSMAEWKHKLTMLLNDKSKQEEVSREKKD
RRDFEQLAALAKIMGLYSHKYGKVVVFSKVPLPNYRRDLDDKRPLREVNLHSTVLRRVDA
YLEDYKTKKSRMKKSFSELLSARPISSCGIGTDEELYEQPELLISSKAVLETILWQKSLQ
MRDEQQAWQESPEGRRMLEFRCSLPAYKEKEAILSAISRNQVLVISGETGCGKTTQLPQF
ILESEIGSVRGAVCNIICTQPRRISAISVSERVASERGEKLGESVGYKVRLEGMKGRDTH
LLFCTTGILLRRLLVDRSLKGVTHIIVDEIHERGINEDFLLVVLKDLLARRRELKLILMS
ATLDADLFSSYFNGASIMKIPGFTYPVRTHFLEDILETSGYRLTPENQIDDYGQERIWKM
NKQAPRKRKSQIASAVEDALRDADFKDYSLQTRESLSCWNPDCIGFNLIEYILCNICENE
RPGAVLVFMTGWDDISALKEKLLTHPVLGDPSQVLLLTCHGSMASSEQRLIFEEPEDGVR
KIVLATNIAETSITINDVVFVLDCGKAKESSYDALNNTPCLLPTWISKVSVQQRKGRAGR
VQPGECYHLYPRCVYGAFAEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPEIL
AVQNAIEYLKIIGALDENENLTILGHYLTKFPMEPKLGKMLIFGAIFNCLDPILTIAAGL
SVRDPFLTPLDKKDLAEAAKSQFCHEYSDHLTLVRAYEGWKDAEIDQAGQEYCWKNFLSA
QSMKAIDGLRIEFLSLLKDIGLVDSNTTSCNSWSYDMYLIRAAVCYGLYPGICSVVHNEK
SFSLKTMEDGQVLLHSNSVNARETKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVVLLFGG
SISKGDTDGHLKMFGGYLEFFMKADVADMYLSIRRELDIFIQSKLLSPMMGIHSFHELLS
AVRFLISDNKGEGKFLFSCQLLGPSKPSTVSLPQALVSRTESGPGGDNSKSQLQTLLTRA
GYDVPLYKTIQLKNNQFQSTVEFQGVQLMGQPCNNKKNAEKDAAAEALEWLMSRSQTGNE
YTNNMTMLKKIKKDHN
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaacgacctccgccaccagtctccgccgatctcagctctcgcgagtttgaggtt
tcgtcactctcgaatcagagtggtttccctaatgatagcatggctgagtggaagcacaag
ttaacaatgcttttaaatgacaagagtaagcaagaggaggtctcgagggagaaaaaggat
aggcgtgattttgagcaactagccgctttggccaagataatggggctgtatagccataag
tatggaaaagttgttgtcttcagtaaggtcccgcttccaaactacagacgtgatttggat
gataaacgcccgctgagagaggtgaacctgcatagtactgtgttaaggcgagttgatgca
tatcttgaagattacaaaaccaaaaagtccagaatgaagaaaagcttttcagaattgttg
tctgcaaggccaatcagtagctgtggtattggtacagatgaagagctctatgagcaacct
gagctactaatatctagtaaagctgttctggagacaattctctggcagaaaagtttacaa
atgcgtgacgagcaacaagcttggcaggaatcaccagaaggaaggagaatgctggaattt
cgttgcagtctccctgcttataaagagaaggaagcaatattatcagccatttcaaggaat
caggtacttgtcatttcaggtgaaacaggttgtgggaagacaacacaacttccacagttt
attttagaatctgagataggatcagttcgtggggctgtttgtaatattatatgcacacaa
ccaagacgcatttcagcaatttctgtctctgaaagggttgcttctgaaagaggggagaaa
ttgggtgaatctgttggctataaagttagacttgagggcatgaaagggagagatacccat
cttctcttttgcaccacaggcatcttactaagaagactactagttgatagaagcttaaaa
ggcgtaacccatattattgtggatgaaattcatgagcgtgggattaatgaagattttctg
cttgttgtccttaaagatctcctagctcgccgacgagaattgaaactgattttgatgagt
gccacccttgatgcggatctcttctcttcatactttaatggagcttcaatcatgaagatc
ccgggcttcacctaccccgttagaactcattttttggaggacattctggaaacgtcgggg
tacagattgaccccggagaatcaaattgatgattatggtcaggaaaggatttggaaaatg
aacaagcaggctccaagaaagaggaaaagccaaattgcttctgctgtagaggatgcatta
agagatgctgatttcaaagattatagtctgcaaacaagggagtctttgtcatgttggaat
cctgactgcattggttttaacctaatagaatacatcttatgcaatatatgtgagaatgaa
aggccaggtgctgttttggtttttatgactgggtgggatgatataagtgctctgaaggag
aagctcctaacacatcctgtcttgggagatccaagccaagtcttgttgcttacgtgtcat
ggttcaatggccagttcggagcagaggttaatatttgaagagcctgaagatggagtacga
aaaatagtgctagcaacaaatattgctgaaactagtatcaccataaatgatgttgttttt
gttcttgactgtggaaaggcaaaagaatcatcatatgatgcacttaataacacaccttgt
ttgcttcccacctggatctccaaagtttctgttcaacaaagaaaaggaagagctggtcgt
gttcaaccgggagaatgttaccatctttatcctagatgtgtatatggtgcttttgcagaa
tatcaattgccagaaattttgaggacacctttgcaatctctctgtctgcaaatcaaaagt
ttaaaactaggaagtatatctgagttcttgtctagggctttacagtctcctgagatactt
gcggtgcaaaatgcaattgaatatttaaaaataattggagctttggatgagaatgagaat
ctgactattctaggccactatttgacaaagtttccaatggaaccaaaacttggcaagatg
cttatatttggtgctatcttcaattgcctggatccaatattaactatagctgctggtctt
agtgtgagagatccttttctaacacctttggataaaaaggaccttgcagaggcagcaaaa
tctcagttctgccatgaatacagtgaccaccttactcttgtgagagcttatgagggctgg
aaggatgctgaaattgaccaagcagggcaagaatattgctggaagaattttctttcagca
caatccatgaaagctattgatgggcttcggatagaattcttatccctcctcaaggatatt
ggattagttgatagcaacacaaccagctgcaattcatggagctatgatatgtatctcata
cgagcagctgtttgctatgggctatatcccggaatttgctctgttgtgcataatgagaag
tcattttctctgaaaacaatggaggatggccaagttctcttacattcgaattcagttaat
gctcgggaaactaaaattccatatccatggctagtttttaatgagaagataaaagtgaac
tcagtatttctccgtgactcaacagctgtgtctgattcagtggtgcttctttttggtggc
agcatctcaaaaggagatactgatggtcacttaaaaatgtttggaggatatctggagttt
ttcatgaaggctgatgttgctgacatgtacctgagtataaggagagaacttgacatcttc
attcagagcaaactactatctccaatgatgggtatacactcatttcacgaactcctgtct
gctgtacggttcctgatttctgacaacaaaggtgaaggcaaatttctattcagttgccag
ctacttggaccgtcaaagccatctacagtgtcattaccgcaggcattggtttcaaggact
gagagtggacctggcggtgataactccaaaagtcagcttcaaacattgctgacacgtgcc
ggatatgatgttcccttatacaagaccatacaattgaagaacaatcagtttcagtctaca
gttgagtttcaaggagtgcagttaatgggacaaccttgtaacaacaagaagaatgcagaa
aaagatgctgcagctgaggcactagagtggcttatgagtagaagtcagacagggaatgag
tacaccaataacatgacaatgctaaaaaaaattaagaaggatcataattaa
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