Lotus japonicus: 130740273
Help
Entry
130740273 CDS
T04348
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130740273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130740273
Enzymes [BR:
lja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
130740273
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130740273
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130740273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
130740273
NCBI-ProteinID:
XP_057448795
LinkDB
All DBs
Position
2:complement(82291114..82295742)
Genome browser
AA seq
393 aa
AA seq
DB search
MLKAVAALPLSPSFTTRSVLRKMSSSSPPPIVHPKFISVEAADIHSRTKPDGFRFSLVSY
NILAQVYVKSAFFPYSPPASLKWKHRSNSILEVLKGLGADFFCLQEVDEFDKFYKGSMQA
LGYSSIYMKRNGQKRDGCGLFYKHDRAELVLEEKIEYNDLVKSIQDGSSSDNDEPSNVQT
VQPDKRKNVPPKNGPKSGKEDRGDPNDPRVRLKRDCVGILAAFKFKDPSHPVVIVANTHL
YWDPEWADVKLAQANYLLSRLAQFKTLVSERYECMPEVIVAGDFNSTPGDKVYQCLISGN
PSSGLLPDCIEKAPIPLCSAYASTRGEPPFTNYTPGFTGTLDHILFCPSDHIKPISYLEL
PDSDATDIAGGLPNFSHPSDHLPIGAEFEIIKE
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaagctgtagctgcgcttcctctctcgccctctttcaccaccagaagcgtattg
aggaagatgagttcatcatcgccgccaccaattgttcatcccaagttcatttctgtagaa
gccgccgatattcattccagaactaaacctgatggattcagatttagcctcgtctcgtat
aacatattggctcaggtttatgtgaagagcgcttttttcccatactctcctccagcgtct
ctcaagtggaagcaccgttcgaattcgattttagaagttcttaagggcttgggagctgat
tttttctgcctgcaggaagttgatgagtttgataagttttacaaagggagcatgcaggcc
ttaggatattcttctatttatatgaagaggaatggacagaagcgtgatggatgcggcttg
ttttacaagcatgaccgtgcagagttggtcttggaggagaaaatcgaatacaatgatctc
gtgaagtcaattcaagatgggagttcttcagataatgatgaacccagcaatgtccagaca
gtccagccagataaaagaaagaatgttccacccaaaaatggacctaaatccggtaaagaa
gatcgtggagatcccaatgatcctcgtgtgaggctaaagcgtgattgtgttggaattctg
gctgcattcaaattcaaagatccgtctcatcctgttgttattgtggccaacacacatctt
tattgggatcctgagtgggctgatgtcaagcttgcacaagctaattatcttctatctcgc
ttagcacaatttaaaaccctggtatcagaaagatacgaatgcatgcctgaggtcattgtg
gctggtgacttcaattctacgccaggagataaggtatatcagtgcctcatatcaggtaat
ccttcatcaggtctgttgcctgactgtatagagaaggctccaattcccttatgtagtgcc
tatgcttctactagaggagagccaccatttacaaactacacacccggcttcaccggaaca
ctcgatcacatattgttttgcccctctgaccacattaaaccaattagttatcttgagctt
ccagactccgacgcaactgatattgctggtggacttccaaatttcagtcatccaagtgat
catctaccaattggtgctgaatttgaaatcatcaaggaatga
DBGET
integrated database retrieval system
