Lotus japonicus: 130740390
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Entry
130740390 CDS
T04348
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130740390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130740390
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
130740390
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
130740390
NCBI-ProteinID:
XP_057448967
UniProt:
I3SC00
LinkDB
All DBs
Position
2:85542099..85546282
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AA seq
253 aa
AA seq
DB search
MAGKAGATPATYSPSPTTDKKKTSLIKEDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYA
EFGNTKVIVSVFGPRESKKAMLYSDVGRLNCNVSYTTFATPVRGQGSDHKDYSAMLDKAL
GGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCLSK
NLVIDPISEEENCQDGSIMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACAKLAKV
MRSCLKEASDSQD
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atggccggcaaagctggagccactccggcgacatactcgccgtctccgaccaccgataag
aagaaaacttctctcatcaaggaagattgggtccgacccgatggccgcggcttccaccag
tgcagacctgcctttttcaggactggtgctgtgaatgctgcatcaggatctgcttatgct
gagtttggaaacacaaaagtcattgtatctgtttttgggccgagagaaagcaagaaggcc
atgctgtacagtgatgtagggcgtctgaattgcaatgtcagctatacaacgtttgcaact
ccagttcgtggacagggttcagaccacaaagattactctgcgatgcttgataaagctttg
gggggtgcaataatattggaatctttccccaagacgactgtggatgtttttgcactggtg
ctggaatctggcggaagtgatctcccagttgtcatatcatgtgctagccttgccttggca
gatgctggaataatgatgtatgatcttgtagcctcagtttctgtgtcatgtctcagtaag
aaccttgtcattgatcctatttcggaggaggaaaactgccaagatggaagcataatgatt
acttgcatgccttctcgctacgaaatcacccaactcacagttactggggaatggtccacc
ccaaagattaatgagggaatgcagctgtgcttggatgcttgtgcaaagcttgccaaggtt
atgaggtcatgtttgaaagaagcttctgattcacaagattag
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