Lotus japonicus: 130740479
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Entry
130740479 CDS
T04348
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130740479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130740479
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130740479
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130740479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
130740479
NCBI-ProteinID:
XP_057449096
LinkDB
All DBs
Position
2:86415344..86424048
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AA seq
664 aa
AA seq
DB search
MSGLLNSSLNGSASNLPDGAGRSFATSFSGQSGAASPIFHHTGSIQGLHNIHGSFNVPNM
SGTLTSRNSTINNVPSGGVQQPTGSLSSGRFTSNNLPVALSQLSHGSSHGHSGVTNRGGI
SVVGNPGFSSSTNGIGGSIPGILPTSAAIGNRNAIPGLGVSPILGNAGPRITSSVGNMVG
GGNIGRTGGGLSVPGLTSRLNLGANSGSGGLSIQGQNRLMSGMLPQGSPQVLSMLGNSYP
SAGGPFSQSHIQGVNNLNSMGMLNDVNSNDTSPFDINDFPQLTSRPGSAGGPQGQLGSLQ
KQGLGVSPIVQQNQEFSLQNEEFPALPGFKGGNADYTMDMHQKEQLHDNAVSMMQSQHFS
MGRSAGFSLGGAYSSHRAQQQQQHTPSISSGNVSFSSVNNNNQDLLHLHGSDIFPSSHSA
YHSQTSGPPGIGLRPLNSPNTVSGMGSYDHLIQQYQQQQNQSQFRLQMSAVSQSFKDQGM
KSMQTAQSTPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFASPWS
EDPTKADPEFSVPQCYYTKQPPTLHQGYFSKFSVETLFYIFYSMPKDEAQLYAANELNNR
GWFYHKELRLWLIRVPNIEPLVKTNTHERGSYHCFEPNTFEIIRKDNFVLQYELLEKRPH
LPQH
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttactaaattcttctctgaatggatctgcttcaaatcttccagatggcgct
gggcggtcttttgctacatcattctctggtcagtctggtgcagcctccccaatttttcat
cacactggatctattcaggggttgcacaacattcatgggagctttaatgttcccaatatg
tctggtacactcacatcaagaaactcaacaataaataatgttccgtctgggggtgttcaa
caaccaacagggagcctttctagtggaagatttacatcaaacaatctccctgttgcactt
tcacagttatctcatggaagctcccatggacattctggagtcaccaatagaggaggtata
agtgttgtaggaaaccctggatttagtagtagcacaaatggaattggtggttctattcct
gggattcttccaacatcagctgcgattggtaaccgaaatgctattccaggattgggagta
tccccaattttgggaaatgcaggtcctcgaatcacaagctccgtgggaaacatggttgga
gggggaaacattggaaggactggtggaggattgtctgtgcctggtcttacttctcgtcta
aatttgggtgcaaacagtggatctggtggtctaagtattcaaggacagaatcgattgatg
agtggtatgcttccccaaggatctccacaggtactttcaatgctaggaaattcttatcct
agtgctggaggcccattttcccaaagccatattcaaggagtgaataacttgaactctatg
gggatgttgaatgatgtgaattccaatgacacttcaccttttgatatcaatgacttccct
caactgaccagtcgtcctggttctgctggagggcctcaaggacagttgggttcgttacag
aaacagggtcttggagttagtcccattgttcaacaaaaccaagagtttagccttcaaaat
gaagaattccctgctttaccaggattcaaaggtggtaatgcagattatactatggatatg
caccagaaagaacaacttcatgacaatgctgtgtcaatgatgcaatctcagcatttctct
atggggaggtctgctggtttcagcttggggggagcatattcatcacatcgagcacaacag
caacaacaacatactccctccatcagtagtggcaatgtttcgttttcatctgttaacaat
aacaaccaagatcttctccatcttcatgggtcggatatttttccatcttcacattcagcc
tatcattcacagaccagtggacctcctggcattggattaaggcctttaaattctccaaat
acagtttctggtatgggttcatatgatcacctcattcagcaatatcaacagcagcagaac
cagtctcagttccgtcttcaaatgtcagctgtaagccaatcttttaaagatcagggcatg
aagtctatgcaaactgcacaatctaccccagatccatttggtttgcttggcttgctaagc
gtgatcaggatgagtgaccctgacctgacatctcttgctcttggaattgatcttactaca
cttgggttaaatttgaattcatcagagaatcttcacaagacttttgcatctccatggtct
gaagacccaactaaggctgacccagagtttagtgtgccacaatgttattacactaaacaa
ccacctactcttcatcaaggttatttttcaaagttttcggtggaaacattgttttacatc
ttttacagcatgcccaaagatgaagcacagttatatgctgcaaatgagcttaacaacaga
ggatggttttatcacaaagagcttcgtctttggttgataagagttcccaacatagagcca
ctggttaaaacaaacacacatgagagaggatcatatcactgttttgaaccaaacacattc
gaaatcatccgcaaggataattttgtcctacagtatgagttgttggaaaagagacctcat
ctgcctcaacattga
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