Lotus japonicus: 130741003
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Entry
130741003 CDS
T04348
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
lja
Lotus japonicus
Pathway
lja03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130741003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lja03400
]
130741003
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
130741003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
130741003
NCBI-ProteinID:
XP_057449737
LinkDB
All DBs
Position
2:91657189..91665137
Genome browser
AA seq
970 aa
AA seq
DB search
MHRNNNNTIAGRTRSKKALAPVNHPKNDVVALSSDDDDGGDDGTTTVGVQESQTTTDALP
ECGVKRGRAKRKVVRIVESDGEVKVNLTRRRKFGLDVLIDEKSNVESAEEETGTSDGPAR
RTRSHFRGSKKLKLGGTLNQPICLDGEEEEEGGGDGDGVLESGEEGAKTCRGGGWSDEEG
EESESEDEMDDDPIWRSWKCSGNRRNKHGGERLKGDGSVCESEKERGGSSWRKGSAIQRN
KRTPELNKGVDSPKTVKKHFNTQRENPQPEEKSVEEKELEALWIESDYCFSLIQDNNASP
SEPPDLCRGGKLEHDVFLDEEIGLRCRSCLRVLTEIKYVFPSFATPPRKKKYSYALDDVD
PSVSSEFQDRVVGDDDDAHNDNYNYNGTVWEIIPGVKENMYPHQCEAFEFLWTNLAGGII
HNKLKGKKELPVAGGCLISHAPGTGKTRLTIMFLQSYMELYPKCRPIIIAPKGILGTWEE
EFKTWKVDIPFHNMNSTDCSDNVRDHVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSIL
GISYNLFEQFTKKDSDERKFLLEVPGLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSG
TPFQNNFDELYNTLCLARPQFTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKI
LQEIRNMICPFVHVHHGTILQESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQGNS
NVLKLEYEETLTAIHPALYGLSERMNLPRFRLNPEEGVKTKFLLELIRLCEIRNEKVLVF
SQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTR
ACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCR
QAEKDHLSKMVFFNSGRDQHHQNVSSAELGDQILEDLIQHKKIGHIFEKVAVIHEETNSN
LKKDFFPLLV
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgcaacaacaacaacaccattgcagggagaactcgcagcaagaaagccctagct
cccgtcaatcatcccaagaacgacgtcgttgccctcagttccgatgacgacgacggcggc
gatgatggcaccaccaccgttggagttcaagaaagtcaaaccaccaccgacgcgcttccg
gaatgcggtgtgaaaagagggagggcgaagcggaaggtagtcagaatcgtggagagtgat
ggtgaggtgaaggtgaatctcacgaggaggagaaagtttgggttggacgttctgatcgat
gagaagagcaatgtagagagtgcagaggaggaaactggaacgagtgatggtccggcacgg
aggacccgttcgcattttcgggggagcaagaaattgaaattaggggggaccttgaatcaa
cccatttgccttgatggtgaagaagaagaagaaggtggtggtgatggtgatggtgttctt
gaatctggagaagaaggagcaaagacatgcaggggaggtggttggtctgatgaagaaggg
gaagagtcggagagcgaggatgagatggatgatgatccaatttggaggagttggaaatgc
tctggaaacagaagaaacaaacatggtggtgagcgattgaagggtgatggcagtgtttgt
gagagtgagaaagagaggggtggttcaagttggaggaaaggctctgcaattcaaagaaac
aaacgcacccctgaactgaataaaggtgtggattcgccaaaaacagtgaaaaagcacttt
aacacacaaagggagaatcctcagccagaagagaaatcagtagaggagaaggaattggag
gctctttggattgagtctgattactgttttagccttatccaagacaataatgcctcacct
tccgagcctccggatttgtgtcgtggagggaaattggagcatgatgtctttcttgatgaa
gaaattggacttcgatgtagatcttgcctacgcgtcctaactgagatcaaatatgttttt
ccctcttttgcaactccaccgcgaaagaagaaatactcttacgctttggatgatgttgat
ccctctgtaagctctgagtttcaagatagagttgtaggagacgatgatgatgctcacaac
gacaattacaattacaatgggacagtgtgggaaataattcctggagttaaagaaaacatg
taccctcatcaatgtgaggcatttgaatttctgtggaccaatttagctggcggaatcatt
cataacaagttgaaagggaaaaaggaacttcctgtggctggtggatgcctaatatctcac
gctcccggcaccgggaaaactaggctcactatcatgtttcttcagtcatacatggagtta
tatccgaagtgcagaccaataatcattgctcctaaagggattctcggtacgtgggaggag
gagtttaaaacttggaaggttgacattccctttcacaacatgaacagcactgattgctct
gacaatgtgagagatcacgttatgaaccttgtttctggtcgtaatgtctcaaagcatgtg
ctcatttcgtattgtcgtatggctaagttatattattggaggagtgaaaagagcatcttg
ggaatcagctacaacctgtttgagcaatttactaagaaggactcagatgaaaggaaattc
cttcttgaagttcctggtttagtagttcttgatgagggtcacactcctaggaattcaaag
agtcttatatggaaatctgtctcagaaatccggacaacaaagcgcatcatcctctccgga
acaccatttcagaataactttgatgagctgtataacacgctgtgtttggcgaggcctcag
tttactaaatgcaatccaaatgagaagggggagagccttagaaatgaaagcaaagggaga
tgggcgtaccttaccagttcattggccaaagttaccgataatggtagaagatctaagata
ttgcaagagatcagaaacatgatttgtccttttgttcacgtgcaccatggaaccattctg
caggagagtttaccagggttgaggaagttggtagttaccttaaatccaaccattttgcaa
aagaacgtttttgaggatattgagagaaaaagaagtagccatcttgctcagggaaactca
aatgtgctaaaattagaatatgaggagactctaactgctattcatcctgcactctatggt
ctatctgaaagaatgaatctcccaaggtttagattgaatcctgaggaaggtgtcaaaacg
aaatttctgttggaactcataaggctttgtgagattcgaaacgagaaggtgttggttttc
agccaatacatcgatcctttgaaacttttggcaagccaacttgaacatcttttttgttgg
aaggaaggaacagatgtgttacaattgcatggaaaagttgatgcaaagctgcgtcaaact
tcaattaaagcttttaacgatcctgacagcaatgtaaaggtgatgctagcatcaaccagg
gcttgttatgaaggtatcagtttggttggagcctcaagggttgttttacttgatgtcgtg
tggaatccctcggtggagaggcaagcgataagtcgtgcttaccggctcgggcagaagaaa
tttgtgtacacttaccatctgatcacggcagggacaagggatgaggataaatgttgtcgt
caagctgagaaagatcacttgtccaagatggtgttctttaattccggacgggatcagcat
catcagaatgtttcatcagcagaattgggggatcaaattctggaagacttgattcagcat
aaaaagattgggcatatatttgaaaaagtagctgttatccatgaagaaacaaactccaat
ctgaagaaggattttttccccctcttggtataa
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