Lotus japonicus: 130741329
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Entry
130741329 CDS
T04348
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
lja
Lotus japonicus
Pathway
lja04120
Ubiquitin mediated proteolysis
lja04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130741329
04120 Ubiquitin mediated proteolysis
130741329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lja04121
]
130741329
Enzymes [BR:
lja01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130741329
Ubiquitin system [BR:
lja04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130741329
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_5
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
130741329
NCBI-ProteinID:
XP_057450167
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All DBs
Position
2:complement(94326865..94333383)
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AA seq
549 aa
AA seq
DB search
MMRLKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCTLWQL
TKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLA
QKRVEYIETTPSVTWLSHVRIVSFMGFLLLLDSIFLYSSMKHLIETWQASVSLFFSFEYM
ILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYLCFFFLIFVNYG
IPLHLIRELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQSDGHRQGTGT
AGSTAQNEAGSGMATDSLSRHEARLQAAAAAASIYEKSYVYPSASSSVCSPGHAFYTPTS
TGFNGEQASSEQAQKQFLIPGQPTNVSFPPMGHYNFLPSQTFASPVNYGEAFGNDPNIPS
SQLEAHRKFLRWQIEVLEKQLRNLPETKADDRSVDDGTSSSDSRGKLIISSSSVSGHVHH
DEEIQDGKA
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgaaaacatatgctggtctgagcttgatagctactttagctattacatat
catgcatttaacagtaggggtcagttctatccggcgatggtgtatctctcgacttccaag
atcagtttggtacttcttctcaacatgggtttggttatcatgtgcactctttggcaattg
acaaaaaaagtgttcttgggttcccttcgggaggcggaggtcgagaggcttaatgagcag
tcgtggagggaggttatggaaatcctctttgccattactattttccggcaggacttctcg
gttacgttccttgccatggttaccgcgctgttgttgattaaggctttgcattggttggct
cagaagagagtcgagtacatcgagaccactccttcggtgacttggctgtcccatgttcga
atcgtatcttttatgggtttcctcctccttctggatagcattttcttatatagttctatg
aaacatttgatagaaacgtggcaggcttcggtttcattattcttttctttcgagtacatg
atattggcaacaacaacagtttcgatttttgtaaaatatattttctatgtcagtgacatg
cttatggagggacagtgggaaaagaaaccagtcttcacattttacctggaacttatcaga
gacttgcttcacttgtctatgtatctgtgcttctttttcttgatatttgtgaactatggt
attcccctgcacctaatacgggagctgtacgagacatttaggaatttcaaagttcgtatt
gcagattacattagatatcgtaagatcacttcaaatatgaatgatcgctttccagatgcc
acacctgaagagcttaatgcaagtgacgcaacctgcataatctgtcgtgaagagatgact
acagccaagaaacttatatgtggacatctttttcatgttcattgcctccgatcatggctg
gagcggcagcatacttgccctacctgccgagccttggttgtgccaccagaaaatggaacg
actgttgctggagggcagcaaggatcacagtcagatggtcaccggcagggaactgggaca
gctggaagcacagctcaaaatgaagctggcagcgggatggcaactgatagtttgagtcgg
catgaagctaggctccaagctgctgctgctgcagcttcaatatatgagaagtcttatgtt
tatccctctgcatcatcttctgtatgctctccggggcacgcattttatacccctactagt
actggatttaatggagaacaagcttccagtgaacaagcacaaaagcagtttcttatccct
ggtcaaccaacaaatgtatcctttcctccaatgggacactacaattttctgccttcccaa
acgtttgcatcccctgtgaattatggagaagcgtttggaaatgatccaaacatcccaagc
tctcagctggaagctcataggaaatttctccgatggcagattgaggttttggaaaagcag
ttacggaatcttccagagacaaaagctgatgacagaagtgtagatgacggcacatcatca
tcagatagcagaggcaagcttattatttcatcgtcatctgtttctggtcatgttcaccat
gatgaggagattcaagatgggaaagcctaa
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