Lotus japonicus: 130741414
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Entry
130741414 CDS
T04348
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lja
Lotus japonicus
Pathway
lja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130741414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130741414
03019 Messenger RNA biogenesis [BR:
lja03019
]
130741414
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130741414
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
130741414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
VHS
zf_UBZ
Ribonuc_2-5A
Motif
Other DBs
NCBI-GeneID:
130741414
NCBI-ProteinID:
XP_057450293
LinkDB
All DBs
Position
2:95119525..95126597
Genome browser
AA seq
936 aa
AA seq
DB search
MSSNDMMGQKLPPPTLVDRFKALLRRRDDDPRFRASEEIVQIYELLLSELTCNLKPIITD
LTIIAEQQREHAEGIADAICTRILEVHADQKLPSLYLLDSIVKNVGQEYVKYFSLRLPEV
FCEAYRQVQPHLHSAMRHLFGTWSKVFSAPVLRKIEAQLQFSRGVNNQPSNVNPLRTSES
PRPTHGIHVNPKYVRQMECSSSNIDSVGGERLDSTGTGGNTSFGLVANKIHQFGPSRHGR
SSSPSRIGIDMPLSTYADEYPADNSTGRTIERESPHHAVDYGVVKTLGREEELSEWQRKQ
FSGDSRKRFQTMTYSLSNGQQRQSPRALIDAYGSDKSQETSSSKPFLVKRLGRNGIDKVS
TTSWQNTEEEEFDWEDMSPTLVEHNRNNGFLQSTTGFTTEMPVTVAANAISSEQDTRTGW
SSGSQLLPVDDSSVIAEDVFASSAYSRVPLGQVSGFQNPINQSLGSGQRNDAWKISSHPS
NSTRHPFNVMGGGRNLLMPPIDNIPNTDVNSYGARLAASRMLPGLKSNVEGGPPPVLPAT
FEMRPSVNVHAARPPSLNPAFQFKNNVRFESINANNNSANHGPNNSLLMREQSLYNVEDK
DFSKGNLYQLPNQQSGLVSSNPQNRGQAPQLQFFPSQDPAASQFSGSSFQGHGGARNTHL
SNAPPNMPFPLPGQNMVNNSLHFLGGALRPLHPARPPLLPHPNHTPLVSSQRPTVPYSNL
FSSLVAQGVISFPNQAPAQDSVGIEFNLDILKVRHESAISALYGDLPRQCTTCGLRFKCQ
DEHSNHMDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTVEEKK
DDEELAVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLGPI
IHAKCRSESSVAPSDDFVLDEGGTTEEGGQRKRIRS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaatgacatgatggggcagaagcttccccctccgacactggtggatcgattc
aaggctctactccggcgacgcgatgatgaccctcgctttagggcttccgaagagattgtc
cagatttacgagctcttgttgtctgaactcacctgcaatctcaagcccatcatcaccgat
ctcaccatcatcgccgagcagcagagggaacacgctgagggcattgctgatgctatttgc
accaggattctcgaggtgcatgcagatcaaaagcttccttcactttatcttttggacagt
attgtgaagaatgttggccaggaatatgttaaatacttctctttacggctacctgaagtt
ttctgtgaggcatacaggcaggttcaacctcacttgcattctgctatgcgtcatctcttt
ggtacctggtccaaagtcttctctgctcctgttctacgtaagattgaagctcaattgcaa
ttttcacgaggagttaataaccaaccatccaatgtcaatcccctcaggacttctgaatca
cctcgaccaactcatgggatacatgttaatccaaaatacgtaagacagatggaatgctct
agttcaaatatagatagtgttggaggtgaaaggttggactcaacagggacaggaggtaat
acaagctttggcctcgtagctaacaaaatccatcaatttgggcctagtaggcatggaagg
tcctcctcaccatcaagaattggaattgatatgcctttgtccacatatgcggatgaatat
cccgctgacaattctactggcaggacaattgagagagaatctcctcatcatgcagttgat
tatggagtagttaaaacattaggtagagaagaagagttgagtgaatggcagagaaagcag
ttttctggtgatagtcggaagagatttcaaactatgacatacagtcttagtaacggacaa
cagcgtcaaagtcctagagctctgattgatgcatatggaagtgacaaaagtcaagaaact
tctagcagtaaacctttcttagttaaacggcttggtagaaatggtatagacaaggtttcg
acaacgtcatggcagaatactgaagaggaggagttcgattgggaagatatgagtccaaca
ttagtagaacataatagaaataatggttttctgcagtcaactactggtttcaccacggaa
atgccagttactgttgcagctaatgcaatttcttctgagcaagataccaggacgggttgg
tctagtgggtctcagcttcttccggttgatgattcctcagttatagccgaagatgtattc
gcctcttcagcttattctcgtgtaccactgggtcaggtatctggattccagaatccaata
aatcagagtctaggctctggtcagcgtaatgatgcttggaagatttctagtcatccatct
aattctacacgacacccctttaatgttatgggaggaggtagaaatcttctgatgcctcct
attgataacattcccaatactgatgtaaactcgtatggtgctcggctggctgcgtcaagg
atgcttcctggtctcaagtccaatgtggagggtggtcctccaccagttttgccagcaact
tttgaaatgaggccctctgtaaatgtgcatgctgctcgtcctcccagcttaaaccctgca
tttcagtttaaaaacaatgtcagatttgaatcaataaatgctaataataacagtgcaaat
catggtcccaataattccttgcttatgcgtgagcagtcattgtacaatgttgaggacaaa
gactttagtaaagggaacctatatcaattgcctaatcagcaatctggtctggtttcatct
aacccacaaaaccgaggacaagcacctcaactacagttttttccctctcaggatccggca
gcatcacaatttagtgggagctcttttcaaggacatggtggtgctagaaatacacatttg
tcaaatgcgccaccaaacatgccattccctttaccaggccaaaatatggtgaataactct
ttacattttctggggggagccttgcgacccttacatccagcccggccgccattgctacct
catcctaatcatactcctcttgtttcaagtcaacggccaactgttccatattctaatttg
tttagttcactcgtcgcccaaggtgtaatctcatttcctaatcaggctcctgcacaggat
tctgttggaattgagttcaatctggatattctgaaggtgcgtcatgaatctgcaatcagt
gctttatatggtgatctccctagacaatgtacaacttgtggtctccgtttcaaatgccaa
gatgagcacagtaatcacatggattggcatgtgactaagaacaggatgtctaaaaaccgt
aagcagaagccttctcgtaagtggtttgtgagtgagaggatgtggcttagtggtgcagag
gcattaggaacagaatcagctccaggttttttgccaaatgatacggttgaggaaaagaaa
gatgatgaagagttggctgttcctgctgatgaggaccagaatacatgtgcattatgtgga
gaaccttttgatgagttttacagtgatgaaacggaggagtggatgtatagaggagctgtg
tatcttaatgcacccaacggaacaacagcaggtttggacaggtcacaattaggccccatc
attcatgctaagtgcagatctgaatctagtgtggctccatcagatgattttgtgctggat
gaagggggcaccactgaggaaggtggtcaaagaaaacgaattcggagttga
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