Lotus japonicus: 130741415
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Entry
130741415 CDS
T04348
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lja
Lotus japonicus
Pathway
lja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130741415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130741415
03019 Messenger RNA biogenesis [BR:
lja03019
]
130741415
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130741415
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
130741415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
TPR_23
zf_UBZ
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
130741415
NCBI-ProteinID:
XP_057450295
LinkDB
All DBs
Position
2:95128368..95132545
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AA seq
577 aa
AA seq
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MEGPTRHQIVMPLPTYVHEYPAHNYRGRTIERESPHHGVDYGLVKKLGREVELSEWQRKQ
FSGEGPKRFQTSKTTYSLINGQQRQSPRALIDAFGGDKRLGRNGIDKVLTTSWQNTEEEE
FNWGDMSPKLAEHNTNNGYLQSTTGFTTGKPVIVGANAISSEQDTRKGWSSGSQLPPVDD
SSVIAEDAFTSSAYSGVSLGQVSGFQNPINQSQGSGQRIDAWKISSHPSVSTRHPFNIEN
KDFNNGNLHQLPNQLAGLLSSNPQNRGQAPQLQFFPSQDPAASQFSGSSFPGHGAARNTH
LSNAPPNMAFPLPGQNMVNNSFHLLGAALPPLHPARPPLLPHPYPTPLVSSQQPTVPYSN
LINSLVAQGVFSWANPVPAQDSVGIEFNLDILKVHHESAISALYGDLPRQCRTCGLRFKC
QDEHSNHMDWHVTKNRMSKNRKQKPSRKWFVSVRMWLSGAEALGTESAPGFLRTDTVEEK
KDDEELAVPADEDQNTCALCLEPFGKFYSDETEDWMYRGAVYLNAPNGTTAGLNRSQLGP
IIHAKCRSESSVAPFNDFALDEGGTSEEGSKRKRMRH
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtcctactcgccatcaaattgttatgccgttgcccacatatgtgcatgaatat
ccagctcacaattataggggtaggacaattgagagagaatctcctcatcatggagttgat
tatggactagttaaaaaattaggtagagaagtagagttgagtgaatggcagagaaagcag
ttttctggtgaaggtccgaagagatttcaaacttctaagacaacatacagtcttattaat
ggacaacagcgtcaaagtccaagagctctaattgatgcatttggaggtgacaaacggctg
ggtagaaatggtatagacaaggttttgacaacgtcatggcagaatactgaagaggaggag
tttaattggggagatatgagtccaaaattagcagaacataatacaaataatggttatctg
cagtcaactactggtttcaccacgggaaagccagttatcgttggagctaacgcaatttct
tctgagcaagataccaggaagggttggtctagtgggtctcagcttcctcctgttgatgat
tcctcagttatagcagaagatgcattcacctcttcagcttattctggtgtatcactgggt
caggtatctggattccagaacccaataaatcagagtcaaggctctggtcagcgtattgat
gcttggaagatttctagtcatccatctgtttctacccgacacccctttaatattgagaac
aaagacttcaataacgggaacctacatcagttgcctaatcagctagctggcctgctttca
tctaaccctcaaaaccgaggacaagcaccacaactacagttttttccatctcaggatccg
gcagcatcacaatttagtgggagctcttttccaggacatggtgctgctagaaatacacat
ttgtcaaacgcgccaccaaatatggcattccctttacccggccaaaatatggtgaataac
tcttttcatttgctgggggcagccttgccacccttacatccagcccgacccccattgcta
cctcatccttatcctactcctcttgtttcaagtcagcagccaactgttccatattctaat
ttgattaattcactcgtggcccaaggtgtattctcatgggctaatccggtccctgcacag
gattctgttggaattgagttcaatctggatattctgaaggttcatcatgaatctgcaatc
agtgctttatatggtgatctccctagacaatgcagaacttgtggtctccgtttcaaatgc
caagatgagcacagtaatcacatggattggcatgtgactaagaaccggatgtctaaaaac
cgtaagcagaagccttctcgtaagtggtttgtgagtgtgaggatgtggcttagtggtgca
gaggcattaggaacagaatcagctccaggttttttgcgaactgatacggttgaggaaaag
aaagatgatgaagagttggctgttcctgctgatgaggaccagaatacatgtgcattatgt
ctagaaccttttggtaagttttacagtgatgaaacggaggattggatgtatagaggagct
gtgtatcttaatgcacccaacggaacaacagcaggcttgaacaggtcacaattaggcccc
atcattcatgctaagtgcagatctgaatctagtgtggctccatttaatgattttgcgctg
gatgaagggggcaccagtgaggaagggagtaaaagaaaacgaatgcggcattga
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