Lotus japonicus: 130742990
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Entry
130742990 CDS
T04348
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130742990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130742990
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130742990
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130742990
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
130742990
NCBI-ProteinID:
XP_057451082
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All DBs
Position
3:90429029..90430311
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AA seq
319 aa
AA seq
DB search
MNSIPKPKLKPVIIREVWAFNLEAEFQLIRGLIHRYPFISMDTEFPGVIFKPAEPHNHRN
LRPTDTYRFIKANVDVLNLIQVGLTLSDAVGNLPDLGTDDCTFIWQFNFRDFNVTRDAHA
PDSVALLRSQGIDFARNASAGVDSARFARLMMWSGLLRNNAVSWLTFHSAYDFAYLIKIL
TRRSLPVRLEDFLRVVRVFFGDKVYDIKHLVKFCDSLYGGLDRIGQILKVDRVAGKSHQA
GSDSLHTMQVFQKIKDVYFDNDGYKKHVNVLYGLELEFNPSLNHLFPSPNQTCSSRVVPL
YYIPTRSNMMPLFKYVQFG
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgaactccatcccaaaacccaaactgaagccggtgatcattcgagaagtgtgggccttc
aacttagaagctgaattccaactcatccgcggcctcatccatcgctaccctttcatctcc
atggatactgagttccccggcgtcatcttcaagcccgctgaaccccacaaccaccgcaac
ctccgccccactgatacctaccgtttcatcaaggccaacgttgacgtgctcaacctcatt
caagttggtctcaccctctccgacgccgtcggcaacctccccgacctcggcaccgacgac
tgcacgttcatctggcagttcaacttccgcgacttcaacgtcacccgcgacgcccacgct
cctgactccgtcgccctgctccgcagccaggggattgacttcgcacgcaacgcttccgcc
ggcgttgattcggcccgattcgctcgtttgatgatgtggtccgggcttctccgcaacaat
gctgtgagctggctcactttccactcagcgtatgatttcgcgtacttgatcaagattctg
actcgccggagccttccggttcgactggaggatttcttgagggtcgtgagggtgtttttc
ggagacaaggtttatgatatcaagcatttggtgaaattctgcgattctctctacggcggt
cttgataggattgggcagattctcaaagtggatcgagtggctggaaaatcacatcaagct
ggttctgatagtttgcatacaatgcaagtgtttcagaagatcaaggacgtttattttgac
aacgatggctataagaaacacgtcaacgtcttgtacgggttagagttagaattcaatcct
agtttgaatcacttgtttccttcacccaaccaaacttgttcgagtcgggtagtgccactt
tactacatccccacacgctcaaatatgatgcctctattcaaatatgtacaatttggctaa
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