Lotus japonicus: 130743099
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Entry
130743099 CDS
T04348
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130743099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130743099
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130743099
mRNA degradation factors
5'-3' decay
Decapping complex
130743099
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
130743099
NCBI-ProteinID:
XP_057451195
LinkDB
All DBs
Position
3:18531547..18538582
Genome browser
AA seq
820 aa
AA seq
DB search
MLDMDVFGGGGDVQSGDVPTEGEVFDASQYAFFGKDVLEEVELGGLEDDDLLPESNEEEF
LLNREEAEDIKSLSDIDDLSTNFWKLNKVESGPKSAAVIGDQGSRENSTAEWANRNDVQN
WFEQSAYDSEGSLDGRRLSSQPYSSLSHLPEPKPLYRTASYPEQQRQQQHHLQHGPGESV
PNWFDQHAYDSETTQDGKRWSSQPHSSIAHLEESKSLYRTSLYPEKQQEHPHFSSEPVLV
PNSSFTSYPPPGGRSQQGSPSNNTGYLNIPHNAIGAQMALSSQNRSRFSNPALQLGGLNH
GLPFSGNMNQFPTGSPFNQRIQNQLVNQAGFYSGDHPNFSSGLPMLNKYDQMLGIMELRD
QLPKSALLGRQNLRFPPQGFDLSFNRSNNGWPRFRSKYMTTEEIENILRMQLAATHSNDP
YVDDYYHQGCLAKKSAGAKLRHHFCPNQIKEHPLRGSANTEQHAFLQVDALGRVPFSSIR
RPRPLLEVDPPNSSRASSPEQNVSDKPLEQEPLLAARVTIEDGLCLLLDVDDIDRFLQFN
QLQDGGIQLKHKRQGLLEGLAASLHLVDPLGKSGHTVMHVANDDVVFLRIVSLPKGRKLL
ARYLQILFPGGELMRIVCMAIFRHFRFLFGGLPSDPVAAETVSNLARVVSKCLREMDLGA
LSACLAALVCSSEQPPLRPLGSPAGDGASLILVSVLERATELLTDPHAASNYNIANRSLW
QASFDEFFGLLAKYCVNKYDSIMQSFLNQGTPNMAVIGSEAARAISREMPVELLRASLPH
TDDRQKKILLDFAHRSLPVVGFNSSAGGNGNHVNSESVLS
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgctggacatggatgtgtttggaggtgggggtgatgtgcaatcgggggatgttccaacg
gaaggtgaagtttttgatgcatcacaatatgcatttttcggtaaagatgttttggaggaa
gttgagttgggcgggctagaagatgatgacttattgcctgagtctaatgaggaggagttc
cttcttaacagagaagaggctgaggatataaaatctctttctgatattgatgatctaagt
accaatttttggaagttgaacaaggttgaaagtggaccaaaatctgcagcagttattggt
gatcagggttcaagagaaaattctacagctgaatgggcaaacaggaatgacgttcagaac
tggtttgaacagagtgcttatgacagtgaaggttctctggatggcagaagattgtcatca
caaccttattcttctctttctcatttacctgaaccaaagcccttgtacagaactgcttca
tatccggaacagcaaaggcagcaacaacatcacctacagcatggccctggtgaatcagtt
cctaattggtttgatcagcatgcatatgattctgaaactactcaagatggaaaacgatgg
tcatcacagccacattcctccattgcacacttggaagaatcgaagtccttgtacagaaca
tctttatatcctgagaagcagcaggagcatcctcatttttctagcgaaccagttttggtg
ccaaactcttcatttacttcttatcctccacctggtggtagatctcagcagggttctcct
agcaataatacaggctacttaaatattcctcataatgctataggagctcagatggcacta
tcttctcaaaatcgttcgcgtttctccaatcctgcgctacagttgggtggattaaaccat
gggctaccttttagtggcaacatgaaccaatttcctactggttccccgtttaaccagcga
atccagaatcaattggtcaaccaggcagggttttattctggagatcatcccaatttttcc
tcaggtttacccatgcttaacaaatatgatcagatgttggggataatggaactgagggat
caattaccaaaatcagctctcctaggtaggcagaatctccggtttcccccacagggtttt
gatttgagtttcaatagaagcaataatgggtggccccgatttaggtctaagtatatgaca
actgaggaaattgagaatatccttagaatgcagcttgcagcaacacatagtaatgatcca
tatgtagatgattattaccaccaaggttgtctagcgaaaaaatctgcaggggctaaactg
aggcatcacttctgtccaaatcaaataaaggaacatcctctacgaggctctgctaatact
gaacaacatgcttttctccaggttgatgctctagggagagttccattctcatcaattcgc
aggcctcgtcctcttctggaagttgatccaccaaattcttctcgtgctagcagccctgag
caaaacgtttcagataagccccttgaacaggagcccctgctggcagcaagggttacaatt
gaggatggtctttgtcttcttcttgatgtagatgatattgaccgtttcctacagtttaat
cagcttcaagatggtggaattcaactaaaacacaaacgtcagggtcttttggaaggactt
gcagcctcacttcatttagttgacccactcggaaagagtggacatacagttatgcatgtg
gcaaacgatgatgttgtttttctcaggatagtttctctacccaagggtcgaaagcttctt
gctaggtaccttcaaatactatttcctgggggtgagcttatgcgaatagtctgcatggcc
atctttcgtcatttcagattcttatttggtggccttccctctgatccagttgcagcagag
accgtgagtaaccttgcaagggttgtttccaagtgcctccgtgaaatggatctgggtgca
cttagtgcttgtctagcagcacttgtttgttcttcagagcagccacctctacgtcccctt
ggaagccctgctggagacggggcttcccttattttagtatctgtgcttgagagggctact
gaactgctcactgatcctcatgctgcaagcaactataatatcgcaaatcgttctctttgg
caggcttcattcgatgaattttttggtcttctcgccaagtattgtgtgaataaatatgat
agtatcatgcaatcattccttaatcaagggacaccaaatatggctgtaattgggtcagaa
gctgctagagcaattagcagggaaatgccagttgagcttttgcgtgcaagtctgcctcac
acagatgatcgccagaagaagatattacttgattttgctcaccgctctttacctgtagtt
gggtttaacagtagtgctgggggtaatggtaaccatgtgaactcagagtcagtgctgagt
taa
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