Lotus japonicus: 130743369
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Entry
130743369 CDS
T04348
Name
(RefSeq) THO complex subunit 4A-like
KO
K12881
THO complex subunit 4
Organism
lja
Lotus japonicus
Pathway
lja03013
Nucleocytoplasmic transport
lja03015
mRNA surveillance pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130743369
09122 Translation
03013 Nucleocytoplasmic transport
130743369
03015 mRNA surveillance pathway
130743369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130743369
03041 Spliceosome [BR:
lja03041
]
130743369
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130743369
TREX complex
130743369
Spliceosome [BR:
lja03041
]
Complex C
Other components
EJC/TREX
130743369
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130743369
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
YHR127W_C
Motif
Other DBs
NCBI-GeneID:
130743369
NCBI-ProteinID:
XP_057451576
LinkDB
All DBs
Position
3:56290079..56292954
Genome browser
AA seq
254 aa
AA seq
DB search
MSAALDMTLDDIIKKNKKSAPSNPRGRNRAPGSGPGPARRIPNRASNRAAPYAAPKAPET
AWGHDMYADEPVQVAAFPGHGGGRASSIETGTKLYISNLDYGVSSDDIKELFSEVGDLKR
HTVHYDRSGRSKGTAEVVFSRRGDAEAAVKRYNNVQLDGKPMKIEIVGTNITTPAVAPAA
NGAFGNSNGVPRSGQGRGGAFGRLRGGGDGGRGRGNRRGRGRGRGHGRGRGEKVSAEDLD
ADLEKYHAESMQLN
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagctctcgacatgaccctcgacgacatcatcaagaagaacaagaagtccgca
ccctccaaccctagaggccgcaaccgagctcccggatccggacccggccccgctcgccgc
attcccaaccgcgcctccaatcgcgccgcgccgtacgccgcccctaaggcaccggagacg
gcgtgggggcacgacatgtacgcagatgaacccgtgcaggtggcagcgtttccagggcat
ggtggtggtcgagcctcttccatcgaaacggggaccaagctctacatttccaacttggat
tacggtgtttccagtgatgatatcaaggaattgttttctgaagttggtgacctgaaacgg
catactgttcattacgacaggagcgggagatcgaagggtactgcagaagtagtcttctca
cgacgaggtgatgctgaagctgctgtgaagagatacaacaatgttcaactagatgggaag
ccgatgaagatagagattgtgggcacaaacattactacacctgctgttgcacctgctgca
aatggagcttttggaaattcaaatggtgttcctagaagtggacaaggtagaggtggggca
tttggaaggctgcgtggtggtggtgatggaggacgagggcgtggcaatcgcagaggaaga
ggacgaggacgagggcatggaaggggtcgtggtgaaaaggtatctgcagaagatcttgat
gctgatttggagaagtatcatgctgagtcaatgcaattaaactga
DBGET
integrated database retrieval system