KEGG   Lotus japonicus: 130743369
Entry
130743369         CDS       T04348                                 
Name
(RefSeq) THO complex subunit 4A-like
  KO
K12881  THO complex subunit 4
Organism
lja  Lotus japonicus
Pathway
lja03013  Nucleocytoplasmic transport
lja03015  mRNA surveillance pathway
lja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130743369
  09122 Translation
   03013 Nucleocytoplasmic transport
    130743369
   03015 mRNA surveillance pathway
    130743369
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lja03019]
    130743369
   03041 Spliceosome [BR:lja03041]
    130743369
Messenger RNA biogenesis [BR:lja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     130743369
    TREX complex
     130743369
Spliceosome [BR:lja03041]
 Complex C
  Other components
   EJC/TREX
    130743369
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    130743369
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3 YHR127W_C
Other DBs
NCBI-GeneID: 130743369
NCBI-ProteinID: XP_057451576
LinkDB
Position
3:56290079..56292954
AA seq 254 aa
MSAALDMTLDDIIKKNKKSAPSNPRGRNRAPGSGPGPARRIPNRASNRAAPYAAPKAPET
AWGHDMYADEPVQVAAFPGHGGGRASSIETGTKLYISNLDYGVSSDDIKELFSEVGDLKR
HTVHYDRSGRSKGTAEVVFSRRGDAEAAVKRYNNVQLDGKPMKIEIVGTNITTPAVAPAA
NGAFGNSNGVPRSGQGRGGAFGRLRGGGDGGRGRGNRRGRGRGRGHGRGRGEKVSAEDLD
ADLEKYHAESMQLN
NT seq 765 nt   +upstreamnt  +downstreamnt
atgtctgcagctctcgacatgaccctcgacgacatcatcaagaagaacaagaagtccgca
ccctccaaccctagaggccgcaaccgagctcccggatccggacccggccccgctcgccgc
attcccaaccgcgcctccaatcgcgccgcgccgtacgccgcccctaaggcaccggagacg
gcgtgggggcacgacatgtacgcagatgaacccgtgcaggtggcagcgtttccagggcat
ggtggtggtcgagcctcttccatcgaaacggggaccaagctctacatttccaacttggat
tacggtgtttccagtgatgatatcaaggaattgttttctgaagttggtgacctgaaacgg
catactgttcattacgacaggagcgggagatcgaagggtactgcagaagtagtcttctca
cgacgaggtgatgctgaagctgctgtgaagagatacaacaatgttcaactagatgggaag
ccgatgaagatagagattgtgggcacaaacattactacacctgctgttgcacctgctgca
aatggagcttttggaaattcaaatggtgttcctagaagtggacaaggtagaggtggggca
tttggaaggctgcgtggtggtggtgatggaggacgagggcgtggcaatcgcagaggaaga
ggacgaggacgagggcatggaaggggtcgtggtgaaaaggtatctgcagaagatcttgat
gctgatttggagaagtatcatgctgagtcaatgcaattaaactga

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