Lotus japonicus: 130744337
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Entry
130744337 CDS
T04348
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130744337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130744337
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130744337
Spliceosome [BR:
lja03041
]
Complex C
Other components
Step II factors
130744337
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_22
AAA_19
SLFN-g3_helicase
AAA_24
Flavi_DEAD
nSTAND_NTPase5
AAA_30
nSTAND3
T2SSE
AAA_16
TMEM247
PhoH
Sigma54_activ_2
NB-ARC
ABC_tran
ATPase
Motif
Other DBs
NCBI-GeneID:
130744337
NCBI-ProteinID:
XP_057452509
LinkDB
All DBs
Position
3:59328632..59338341
Genome browser
AA seq
1267 aa
AA seq
DB search
MESAGTGASGVVDLDKMTETLEPEKSSGGGLYVPGKDRVVYVAPERKSRLGLDALASAKR
GGAQYDGGFKVPKERTMSIAASADDEDKSESSVVDDGGHAGTRRHAKRRYRETISETSRA
ESSLSEDRYGDTPGSRSTEHMGSDVRASPSEYDREDRRSERRHSRDDSRSGSNRVRHRDT
YESRESYSERDSRSRYDHEYGRKRNRYEGSRRTPGRSDWDDGRWEWEDTPRRDSSRRHQP
SPSPMFVGASPDARLVSPWLGGHTPHSSFTSSSPWDHVSPSPIPIRASGSSVKSSLSGHN
GRSHRPNFSSGTSNTYEDEVADRSLGEEHKYEITESMRREMEYDADRAWYDREEGSTMYE
ADNSSVFLGDEASFQKKEAELAKRLVRRDGTKMSLAQTKKLSQLTADNAQWEDRQLLRSG
AVRGTEVQTEFDDEDERRVILLVHDTKPPFLDGRVVYTKQAEPIMPIKDPTSDMAIISRK
GSTLVREIHEKQSSNKSRQRFWELAGSKLGNILGVEKTAEQIDADTATVGEDGEIDFKEE
AKFSQHLKKGEAVSEFAKSKTMAEQRQYLPIFSVREELLQVIRENQVVVVVGETGSGKTT
QLTQYLHEDGFTIGGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPNT
IIKYMTDGVLLRETLKDSELDKYRVIVMDEAHERSLSTDVLFGILKKVVAQRRDFKLIVT
SATLNAEKFSNFFGSVPVFNIPGRTFPVNILWSKTPCEDYVEGAVKQAMTIHITSPPGDI
LIFMTGQDEIEAACYALAERMEQMVSSAKKEVPKLLILPIYSQLPADLQAKIFEKAEDGA
RKCIVATNIAETSLTVDGIYYVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAG
RTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQD
NILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLMGDQLGCLEEVLTIVSML
SVPSVFFRPKDRAEESDAAREKFFVPESDHLTLYNVYQQWKQHSYRGDWCNDHFLHVKGL
KKAREVRSQLLDILKTLKIPLTSCFPDTDIVRKAICSAYFHNSAKLKGVGEYVNSRNGMP
CNLHPSSALYGMGCTPEYVVYHELILTSKEYMQCATAVEPHWLAELGPMFFSVKESDTSL
LEHKKKQKQEKTAMEQEMENLKKVQAELEQERKQKEKEKMAQHQQQISMPGLRKGSSTYL
RPKKFGL
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggagagtgctggaactggtgcttccggagtcgttgacttagacaagatgacggagaca
ctggaaccggagaagtcttcaggtggcggtctctatgttcctgggaaggatagagtggtg
tacgttgctcccgaaagaaaatctcgcttaggacttgatgcccttgcgagtgcgaaacgg
ggaggggctcagtatgatgggggattcaaggtgcctaaagaaagaaccatgtctattgcg
gcctcggcggatgatgaggataagtctgagagttctgttgttgatgatggtgggcatgcc
ggtacacgcagacatgctaagaggaggtatcgtgagacaatcagtgaaacgtcgcgtgca
gaaagttctctgtctgaagatcgctatggtgatacaccggggtcccgatcaactgagcat
atgggttcagatgtccgtgcctcgccttctgaatatgacagggaggaccgtaggagtgag
aggaggcattccagggatgattcaagaagtggtagtaacagagtgcggcatagagacact
tatgaaagtagggaatcttattcagaaagggattcccgtagtcggtatgaccatgaatat
ggtaggaagcgaaacagatatgaaggttccagaagaacgcctggcaggtctgactgggat
gatggtagatgggaatgggaagatactccacggagagatagttctagacgtcatcaacct
tcaccatccccaatgttcgttggtgcctcacctgatgcacgattagtttctccatggttg
gggggccacactccccattcatcatttacttcatcttcaccatgggaccatgtttctccc
tctcctattccaatacgtgcttcaggatcctcagtcaaatcttctctttctggacataat
ggaaggtcacatagaccgaatttttcttcaggaacttcaaatacatatgaggatgaagta
gcggataggtccttgggtgaagagcacaagtatgagattactgaaagcatgcgccgagag
atggaatacgatgctgaccgagcatggtatgatagagaggaaggtagcacaatgtatgag
gctgataattcatcagtgtttcttggagatgaggcttcctttcagaaaaaagaggcagag
ttggccaaaagactggtccgaagagatgggactaagatgtcacttgctcagaccaagaaa
ttgtctcagctcacagctgataatgctcagtgggaggaccggcaattactgagatcagga
gcggttagaggtacagaggttcagactgaatttgatgatgaggatgaacgcagggttatt
ctgcttgtgcatgatacaaagcctccttttcttgatggcagagttgtttatactaagcag
gcagagccaataatgccaataaaagatccaacatctgacatggctataatttctcgtaaa
ggatctactttggtccgagaaatccatgagaagcagagttcgaataagtctcgccaacgc
ttttgggaactagcaggctcaaaacttggtaatatcttaggagttgaaaagacagcagaa
cagatagatgcagacactgcaacagtgggtgaagatggggaaatagattttaaggaggaa
gcaaagttttcacagcacttgaagaagggagaagctgtgagtgagtttgctaagtcaaaa
accatggcagagcaaaggcaatatctgccaattttttcagtgcgagaagagttattacag
gtgattcgtgaaaatcaggtggtggtagtggttggagaaactggttcaggaaaaacaacg
caattgacacagtatcttcacgaggatggctttactataggtggcatagtaggttgcacc
caaccaaggcgtgtggcagctatgagtgttgctaagagagttagcgaggagatggaaaca
gagttgggcgataaagttggttatgctatccgttttgaagatgtgacggggccaaatacc
attataaagtacatgacagatggggtacttctacgtgaaacactcaaagactctgaacta
gacaaataccgggttattgtcatggatgaagcccatgaaagatcattaagcacagatgtt
ctttttggaatattgaagaaagttgtagctcaacgtcgtgatttcaagcttatcgtcact
tcagcaactctgaatgcagagaaattttcaaatttctttggaagtgtgcctgtttttaat
attcctgggaggacatttccggtgaatatattatggagtaaaaccccatgtgaagattat
gttgaaggtgcagtgaagcaggctatgactattcacataaccagccctccaggtgacatc
cttatcttcatgactggccaagatgagattgaggcagcttgctatgcccttgctgaaaga
atggagcagatggtgtcatctgcaaagaaagaagtccctaaactattgattcttcccata
tactctcaacttcctgctgacttgcaagcaaaaatatttgagaaagctgaagatggagcc
cgtaaatgcattgtcgccactaatattgcagagacatcgttgactgttgatggtatctac
tatgtcatagatacaggctatggtaaaatgaaggtgtataaccctaggatgggtatggat
gctctccaagtcttccctgttagccgtgctgctgctgaccagcgtgctggtcgagctggt
agaactggacctggtacgtgctatcgcctgtatactgagagtgcttacctaaatgaaatg
ttgcccagtcctgttccagaaattcaaaggactaaccttggcaatgtggtcttgctgctg
aaatctcttaaagttgaaaacttacttgattttgatttcatggatccacctccacaagat
aatattctcaactctatgtaccagctgtgggtattgggggcccttaacaatgtaggggga
ttaactgatcttggctggaaaatggttgagtttccacttgaccctccgcttgctaagatg
cttttgatgggtgaccagttagggtgtctagaggaggttttgacaatcgtttccatgctt
tcagtaccgtctgttttcttcagacccaaggaccgagcagaggagagtgatgctgcacgt
gaaaagttttttgttccagaatccgatcacttaaccttgtacaacgtttatcagcaatgg
aaacaacatagttacagaggtgattggtgcaatgaccattttttgcatgtcaaaggtctg
aaaaaggctagagaggtgagatctcagctgcttgatattctcaagactctaaagattccc
ttgacttcatgctttcctgatacagacattgtcaggaaagcaatttgttctgcatacttc
cacaattcagcaaaattaaagggtgtaggagaatatgtcaatagcaggaacgggatgcca
tgtaatcttcaccccagtagtgctctatatggcatgggttgcactcctgagtatgtggtt
tatcacgagctaatcctgacctcaaaggagtacatgcagtgcgccacagcagtggagccc
cattggctggctgagctaggacccatgtttttctctgttaaggagtctgatacatcattg
cttgaacataagaagaaacaaaaacaagagaaaacggccatggagcaggagatggagaat
ttgaagaaggtacaagcagagcttgagcaagaaaggaaacagaaagagaaggaaaagatg
gctcagcatcagcagcaaatttccatgccaggtttacgaaagggttcttccacatacttg
agaccaaagaagtttggtctgtaa
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integrated database retrieval system
