Lotus japonicus: 130744974
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Entry
130744974 CDS
T04348
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130744974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130744974
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130744974
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130744974
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
130744974
NCBI-ProteinID:
XP_057453113
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All DBs
Position
3:complement(89043497..89044478)
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AA seq
322 aa
AA seq
DB search
MNSINEIPKPKLKPVIIREVWAFNLEAEFQLIRGLIHRYPFISMDTEFPGVIFKPAEPHN
HHNLRPADTYRLIKANVDVLNLIQVGLTLSDAAGNLPDLGTDDCTFIWQFNFRDFNVTRD
AHAPDSVALLRNQGIDFARNAAAGVDSARFARLMMWSGLLRNNAVSWVTFHSAYDFAYLI
KILTRRSLPTRLEDFLRFVRVFFGDKVYDIKHLMKFCDSLYGGLDKIGQILKVDRVAGKS
HQAGSDSLHTMQVFQKIKDVYFKNDGHKKHVNVLYGLEIEFNPSLNHLYPPPTQTCSSRV
VPLYYIPAHSNMMPLFKYVQFG
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgaactccatcaatgaaatcccaaaacccaaactgaagccggtgatcatccgagaagtg
tgggccttcaacttagaagctgaattccaactcatccgcggactcatccatcgctaccct
ttcatctccatggatactgagttccccggcgtcatcttcaagcccgccgaaccccacaac
caccacaacctccgccccgctgatacctaccgtctcatcaaggccaacgtggacgtgctc
aacctcatccaagttggcctcaccctctccgacgctgccggcaacctccccgacctcggc
accgacgactgcacgttcatctggcagttcaactttcgggacttcaacgtcactcgcgac
gcccacgctcctgactccgtcgctctgctccgaaaccaagggattgacttcgcacgcaat
gctgccgccggcgtcgattcggcccgcttcgctaggttgatgatgtggtcggggcttctt
cgcaacaatgctgtgagctgggtcacgttccactcggcgtatgattttgcttacttgatc
aagattctgactcgccggagccttccgactagactggaggatttcttgaggttcgtgagg
gtgtttttcggagacaaggtttatgatatcaagcatttgatgaaattctgcgattctctc
tatggcggtcttgataagattgggcagattctcaaagtggatcgagtggcgggaaaatca
catcaagctggctctgatagtttgcatacaatgcaagtgtttcagaagatcaaggacgtt
tattttaagaacgatggccataagaaacacgtaaatgtcttgtatgggctggagatagaa
ttcaatcctagtttgaaccacttgtatcctccacccacccaaacgtgttcgagtcgggta
gtgccactttactacattcccgcacactcgaatatgatgcctctattcaaatatgtacaa
tttggttaa
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