Lotus japonicus: 130745220
Help
Entry
130745220 CDS
T04348
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130745220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130745220
03012 Translation factors [BR:
lja03012
]
130745220
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130745220
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130745220
Translation factors [BR:
lja03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
130745220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
AAA_19
ATPase
AAA_16
Motif
Other DBs
NCBI-GeneID:
130745220
NCBI-ProteinID:
XP_057453361
LinkDB
All DBs
Position
3:63170415..63185477
Genome browser
AA seq
1151 aa
AA seq
DB search
MHNPKSAASFLIARAKSLQLHHLHHHRVPSTSWSLFKLQPWLSSLNAKSFIATRLFSGYY
GLEQFSDDEYDCDFENHQASSTVANVDEWKWKLSMLLRNEKDQEIVSRDKRDRRDYEQIA
NLAKRMGLYSEMFGKVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVESLLQEYLDR
LQLKSDKTTDHPDDVKSTKQVKDIYIDENADSYVDESVMEKVLQKRSLRMRNMQRAWQES
PEGKKMLEFRKSLPSFREKEGLLQAIARNQVIVISGETGCGKTTQIPQYVLESEIESGRG
AFCSIICTQPRRISAMAVSERVSAERGEPLGESVGFKVRLEGMKGKNTHLLFCTSGILLR
RLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNY
FGGVPTFHIPGFTYPVRAHFLEDVLETTGYKLTSFNQIDDYGQEKLWKTQKQLAPRKRKN
QITALVEDALSKSSFENYSSRTRDSLSSWAPDCIGFNLIEAVLCHICRKERPGAVLVFMT
GWEDISCLRDQLKAHPLLGDPNRILLLTCHGSMATSEQKLIFEKPPPNVRKVILATNMAE
ASITINDVVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRKGRAGRVQPGECYHLY
PKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPRTVQNAIDFLK
MIGALDEKENLTNLGKFLSMLPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLLPQ
DKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSL
RKQFSFILKEGGLLDADASAINKLSHNQALVRGVICSGLFPGMASVVHRETSMSFKTMDD
GQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAG
HLKMLDGFIEFFMDPNLADCYLKLKEELDKLIQKKLEDPNTDIHKEGKYLMLAVQELVSG
DQCEGRFVFGRASRKPRASNDENKFTKDGTNPKSLLQTLLMRAGHSPPNYKTKHLKTNEF
RALVEFKGMQFVGKPKRNKQLAERDAAVEALAWLTHTSENAQHEDDKSPPDVTDNMLKLL
GKRNKSKRRSG
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgcataatccaaaatctgcagcatctttcctcatagcacgtgccaagtccctccaactc
caccatctccaccaccaccgcgtcccttcaacatcatggtcactcttcaagcttcagcca
tggctttcttcactcaacgccaaatccttcatcgccacgcgcctcttctctggctactac
ggcctcgagcagttctccgatgatgaatatgactgtgatttcgagaatcaccaggcatcg
tctacagtggccaatgtggatgaatggaaatggaaactcagtatgctgttacgcaacgaa
aaggatcaggagattgtatctcgagataaaagagatagaagagactatgaacagatagct
aaccttgccaaaagaatgggactttacagtgagatgtttggaaaagtgattgttgcgagc
aaggtgcctcttcctaactaccggccagatttggatgacaaacgtccacaaagggaggtg
gtgattccactgagcttgcaaaggagggttgaaagtttgttgcaggaatacctcgataga
cttcaattaaagtctgacaaaacaactgaccatccggatgatgtaaagtccaccaagcag
gtcaaagatatatacatagatgaaaatgctgattcttatgtggatgaatctgttatggaa
aaggttcttcagaagaggagtttgaggatgcgtaatatgcaaagagcttggcaggaatca
cctgaaggcaagaagatgctggaattccggaagtctcttccatcattcagggagaaggaa
ggtttacttcaagctatagcacgtaatcaggtgatagtgatatctggagagactggatgt
ggtaaaactactcaaattcctcaatatgtattagagtcagagatagagtctggtcgtgga
gcattttgcagcattatttgcacacagcctcgaagaatatctgctatggcagtgtctgag
agagtgtcagcagagagaggagagcctctcggtgaatctgtaggtttcaaagttcgatta
gaaggaatgaaagggaaaaacacccatctgcttttctgtaccagtggtatattacttcga
aggttgctgagtgatcgaaacctgaatggtataacccatgtttttgtggatgaaattcat
gagcgaggcatgaatgaagatttcttactgattgtgttgaaggatctgcttccgcgtcgt
cgggatttaagattgattttaatgagtgccaccttgaatgctgagcttttttcgaattat
tttggaggtgtgccaacatttcatattccgggtttcacctatcctgtgagagcccacttt
ctagaggatgttttggaaacgactggatataagttgacttccttcaaccaaattgatgat
tatggtcaagagaaattgtggaaaacacaaaagcagctagccccacggaagaggaaaaac
cagatcactgctcttgttgaggatgctctttctaaatctagcttcgagaactatagttca
aggacacgcgattcattatcttcttgggcacctgactgtataggatttaatctcattgag
gctgttctgtgtcatatatgtcggaaggaacgaccaggtgctgtcttagtatttatgact
gggtgggaggatataagctgtttaagggatcagcttaaagcacatcctcttttaggggat
cccaataggattctgcttctaacatgtcatggttcgatggcaacttctgaacagaaactc
atatttgaaaaaccgcctccaaatgtcagaaaagtaatacttgctacaaatatggccgag
gcaagtattacaatcaatgatgtagtttttgtgattgactgcggaaaagcaaaagagacc
acttatgatgctttgaataacacgccatgcctactaccttcttggatatcacaagcatcc
gcacggcagagaaagggtagggctggtcgtgtgcagccaggtgaatgctaccacttgtac
ccaaaatgtgtttatgaagctttttctgaatatcaacttcctgaactactgagaacgccc
ttgaactctctttgcttgcaaataaaaagtttgcaggttgagagcataggggagttctta
tcagcagctttgcaggcaccagaaccacggactgtccaaaatgcaattgattttctcaag
atgattggagcattagatgaaaaagaaaatcttaccaatcttgggaagtttctttcaatg
cttccggtagatccgaagctggggaaaatgttaataatgggagctatatttcgttgcttt
gatcctgttcttacaatagttgctggccttagtgtcagggatcctttccttttgccccaa
gataagaaggatttagcagggacagccaaatctaggttttctgctaaagattacagcgac
cacatggctcttgttcgagcatatgaaggatggaaagatgcagaaagagaaggatcagcg
tatgagtactgctggagaaattttctttctgcccaaactcttcaggctattcattcactt
cggaagcagtttagcttcatcttgaaagaaggtggcctattagatgcagatgcaagtgct
atcaacaaattgagtcacaatcaggctcttgtacgtggagtcatttgttccggactcttt
cctggcatggcatcggtggtgcacagagagacatccatgtcatttaaaacaatggatgat
ggccaagttttattatatgcaaattcggtgaatgcacgttatcagaccattccttaccca
tggttggtgtttggtgagaaagtaaaagtcaatgctgttttcatccgtgattccactggt
gtatctgattcaatacttatcctttttggtggtgctctaagtaatgggatacaggctgga
catctgaaaatgttagacgggtttattgagttctttatggatcctaatttagccgactgc
tatttgaagcttaaggaagagcttgataagctaatccaaaagaagctagaagatcctaac
actgacattcacaaggaagggaagtacttgatgcttgctgttcaggaactggtttcagga
gaccaatgtgaaggaagatttgtgtttggccgtgcgagtcggaagcctagagcctctaac
gatgagaataaattcacaaaagatgggacaaaccccaagagcttgctgcagacactgttg
atgagagcagggcactctccaccaaattacaaaacaaaacatctcaagacaaatgagttt
agggcactggtggagtttaaaggaatgcaatttgttggcaaaccgaaaagaaataagcag
cttgcagaaagggatgctgctgtcgaggcattggcttggttgactcatacctccgaaaac
gctcagcacgaagatgataaatctcctcctgatgtcactgacaacatgctaaaacttcta
gggaagcggaataaatcaaagcggcgttctggttga
DBGET
integrated database retrieval system
