KEGG   Lotus japonicus: 130745435
Entry
130745435         CDS       T04348                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1-like
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
lja  Lotus japonicus
Pathway
lja03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    130745435
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lja03021]
    130745435
Enzymes [BR:lja01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     130745435
Transcription machinery [BR:lja03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     130745435
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 Clink
Other DBs
NCBI-GeneID: 130745435
NCBI-ProteinID: XP_057453656
LinkDB
Position
3:complement(67700318..67723741)
AA seq 1868 aa
MEENPTLSFLDGNVVGIQFGMATRQEICTASISDSSISHASQLSNPFLGLPLEYGRCESC
GTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRL
LSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALL
PCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLSVPVVSDGVSVMSSDPSM
TFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVN
KELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVN
SHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPP
TTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE
KQLLSSHSGNLNLQLSSDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPQPALLKAGSGD
CYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQE
ALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNELV
AQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSK
GLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGL
SEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEPVGVLA
ATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCR
ENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEELKINM
AEVFQRCQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNFSAPCLTFIWPAGDGNDLHET
TKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKES
IKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVA
KGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEK
CHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHMVKSLTNGE
EENNACLGEDIDDLLEEENADYSLSPQHTSGVDAVFEETFEAMNGPESNGWGSTTDRTET
KSTQWSAWESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDGNVEQTKTISNDWTA
WGKNKSEIQDNVAEKAEGECGSSEMWKTAVIQEGSSKSNAWKSNIEQRSDEDSWSSQKLK
ADVIQDSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRAEDDSWSSKKQLGSDATQEDS
SKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKRAQDDSWSSQKDVTRESSSKVDAW
GANNEASNPKSNDWSAWGKNKDGTQDGGSERAQDDSSSLGKWKAESQVEADTVQEDSSKS
KAWERNSDNVKVGNSSWGKPKFPETQAWDPQKETNQGAGSRGWDSQIASANSDSDRNFQW
GKQGRESFKKSQGWGSNAGDMKNKNRPGRAPGPRLDMYSSEEQDILKDIEPIVQSIRRIM
QQEGYNDGDPLGADDQRFILENVFEHHPEKETKMGAGIDFVMVSRHTNFQDSRCLYVVLK
DGRREDFSYRKCLDSWIRKKYPEIAESFLGKYFRKPRPRDQTPNQTQDQTSTPVGDQPQT
PVPAETNE
NT seq 5607 nt   +upstreamnt  +downstreamnt
atggaggagaatccaactttgagctttttagatgggaacgttgtggggatccaatttggt
atggctactcggcaggaaatttgtacagcatcgataagtgactcctcaattagtcatgct
agtcagctttcaaatccattccttgggctaccccttgaatatggcagatgtgaatcttgt
ggtacttctgaagcaggaaaatgtgaaggtcactttggatatattgagcttccagttcca
atatatcatcctagtcatgttagtgaattaaagaaaatgctgagcctggtctgcttaaac
tgtttaaagatgaagaaaaccaagtttccatcttcaagcagtggtttggcacagaggtta
ttgtctccctgctgtcaggagcctaatgctgcacaagtttctatacgggaagtcaaaaca
ggtgatggagcttgctacttagtacttaaagtgtctaagtcaaagatgcaggatggtttt
tggaggtttttggacaaatatggctatcgttatgaggttgatcatactcgagctttgctt
ccttgtgaggtgatggaaatgatcaagagatttcctctagaaaccaagaaaaaactagct
ggaaaaggatattttcctcaagatggatatgtaataaagtatcttcctgtaccaccaaat
tgcttgtctgtgcctgttgtttccgatggcgtcagtgtcatgtcttcggatccttccatg
acatttctgagaaaattgctcaggaaggttgaagtcatcagaagttcaagatctggtgaa
ccaaactttgagtctcatcaagtggaagcaaatgacttgcagtctgtggttgatcagtat
cttcaaattaggggctgtgctaaacctgcccgtgatatagaaacacacttcggtgtcaat
aaagagctgagtgatgcatcaaacaaagcatggcttgataaaatgaaaagtctatttata
agtaagggttcaggtttttcttcaaggagtgtgataactggagatgggtacaagaggata
aatgaagtaggaattccgcatgaaattgctcagaggataacgtttgaagagagagtaaat
tcccataatatgtgttatttacagaagttggttgatgaaaatttgtgtctggcctacaag
gaaggtgtgtcaacttactcactgagggagggctcaaaggggcacacatatcttaagcct
ggtcagatagttcatagaaggataatggatggggatatcgtcttcattaacagaccacct
acaactcacaaacactcattacaagcacttgtagtctacatacatgatgaccacacagtg
aagataaatcctttaatttgtggaccccttggagctgattttgatggtgactgtgtccat
ctattttatccacagtcacttgctgctaaggctgaagtagtggagctattctcggtggag
aaacagctcctcagctctcacagtggtaatctgaacctacaattatcctcggattcctta
ttgtcactgaagatgttagtgaagaaaggttttatggatagagcagcagctaatcaattg
gcaatgtttctttccttgcctttgccacagcctgctttgctgaaggccggttctggtgat
tgttattggacatcaacccaaattttgcagtgtgctttgcctttatcttttgattgtact
gggggacgttacttgattagggagagtgatatcttaggatttgatttgggtagggatgtt
cttcctgcagttataaatgaaatagcagcgtcagtgttctttgggaagggtcctcaagag
gcattgaatttctttgatgtgttacaaccgtttttgatggaatgcatattcagtaatgga
tttagcgttggcttacatgacttttcaatatctggggccgtgaaaaggattacagacaga
aacatagggaaagtttccccactgttgtatcagttgaggtttatatacaatgagttggtg
gcacagcaattagagaagcacatgcaagacattgaacttcctgctataaaatttgcttca
aaatcatcccgacttggggatatgattgattccaaaagtaaatcagctcttgataaggtg
acacaacagatagggttccttgggcagcaactctttgtgcgagggcgactgtattccaag
gggttgttggaggatgttgcgtcacattttaaattaaaatgtgactatgatggagatggt
tatccctcagctgaatatggattactcagaggttgttttttccatggtttggacccattt
gaagagttagtacattcaatttccacaagagagataatggttcgctcttcaagaggattg
tctgagcctggaactttatttaaaaacttgatggccatccttcgggatgttgtagtttgt
tatgatggaactgtgcgaaatgtatgtagtaattccatcattcagttcgagtatgggtta
aaagccggagacaatgctagctacttattccctgctggtgagcctgtaggtgtcttagct
gcaactgcaatgtcaaatcctgcatataaggcagttcttgatgctagtcctagcagcaat
tgttcttgggaacttatgaaggaaatactactctgcaaggtccactttcgaaatgaacca
attgatcgccgagtaattttatacttgaatgactgtgattgtggaaggagttattgccgg
gaaaatgcagcgtatgcggttaaaaatcaattgagaaaagtcagccttaaggacacagct
gtagatttcattgttgaataccaacaacagcggaaacgtaaaggttctgaaattgatgct
ggccttgttggtcatattcatttggatgaggtgaagttggaggaacttaagatcaatatg
gctgaagtttttcaaagatgtcaggaaaaacttgattctttcaatcggaaaaggaaattt
aatcaaattttcaagagaactgaattatttttcagtgagtcttgcgtttctccaaatttt
tctgcaccatgcttgacattcatttggccagctggtgatggtaacgatttacacgaaacc
actaaaattctagctgacacaatctgcccggctctgttagatacaataatccaaggggac
ccccgtattaactctgcaaatataatctgggttaatcctgacacaaacacttgggtgcgc
aacccatccaagtcttctaatggtgaattggcactagacatcattcttgagaaggaatct
attaaacaaaatggtgatgcttggaggatagtgcttgattcctgccttcctgtccttcat
ctgattgataccaggcgttctattccttatgctataaagcagattcaggaattactggga
atatcatgtacttttgatcaagcaattcagcgtcttgcagcatctgtaaaaatggtggca
aaaggtgttcttagagagcatctcattctgttagcaagcagtatgacttgtggcgggaat
ttggtgggcttcaatacaggtggatataaagcactggctcgtcaattaaatattcaagtg
ccattcactgatgcaactctttttactcctaaaagatgttttgagcgagctgctgagaaa
tgtcatacagactctttatctagcatcgttgcctcctgttcctggggtaaacctgtggca
gttggaacaggatcaaaatttgatgttctatgggatgcgaaagagataaagtcaaatgac
cttgacgggatggatgtctacaattttcttcacatggtgaaaagccttaccaatggggaa
gaagaaaataatgcttgcttgggtgaggacattgatgatttgctagaagaggagaatgct
gattacagcttgtccccacagcatacctccggagttgatgctgtgtttgaagagactttt
gaagcaatgaacggtccagaatccaatggttggggttcaactactgatcggactgaaaca
aagtcaacacagtggtcagcctgggaaagtaataaagcagaaacaaaagatggtggttct
caaagagtccatgaggattcttggacttctcgtgatgtgatgaaagatgattcccagatg
accaacgcttgggatggaaacgtggaacagaccaaaacaatttcaaatgattggactgct
tgggggaaaaataaatcggaaatacaggataatgtggctgaaaaggccgaaggggagtgt
gggagctctgaaatgtggaaaactgctgttatccaagaaggctcttccaagtccaatgct
tggaagtcaaacatagagcaacgtagtgatgaggattcttggagctctcagaaactgaaa
gctgatgttatccaggactcttccaagccaagctcttggggagctaaacccaagtcgaat
gactcctccaattggggaagaaataaagatgaaatacaggatgttgtgtctagaagagcc
gaagatgattcttggagctctaagaaacagcttggttctgatgctacccaagaagactct
tccaagttcagcttttggggaggtaacaaagatacaacaaagccgaagtcaaatgattgg
tccagctggggtggaaatagagatggaatacaggatggtgggtctaaaagagcccaagat
gattcttggagctctcaaaaagatgttaccagagaaagctcttctaaggttgatgcatgg
ggtgcaaataatgaggcatcaaaccccaagtcaaatgattggtcagcctgggggaaaaat
aaagatggaacacaagatggtggttcagagagagcccaagatgattcatcaagcttgggt
aagtggaaagctgaatcacaagttgaagctgatacggtgcaagaagactcttctaaatcc
aaagcctgggaacgtaattctgacaatgtgaaggttggcaatagctcttggggaaaaccc
aaatttccagaaactcaagcttgggatccccagaaagagacaaatcaaggtgcaggttca
cgtgggtgggactcacaaattgcttctgctaattctgacagtgatagaaattttcaatgg
ggaaagcaaggaagagaatcatttaagaaaagtcaaggttggggatcaaatgctggtgac
atgaaaaataagaatcgtcctggcagagcacctggaccaaggttggatatgtattcatct
gaggaacaggatattctcaaggatattgaacctattgtccagtccatcagacgaataatg
caacaagaagggtacaatgatggggatccgctgggtgctgatgaccaacggtttatcctg
gagaatgtctttgaacaccatccagagaaagaaaccaaaatgggcgctggcattgatttt
gtcatggtaagcaggcacaccaattttcaggatagcagatgcctgtatgtggttttaaag
gatgggcgaagggaagacttctcgtaccgaaagtgcctggatagctggataaggaaaaaa
tatcctgagattgctgaatcattcttaggcaaatatttccggaagccccgtcctagggac
cagaccccaaatcaaacgcaggatcagacctcaactccagtgggggatcagcctcaaact
ccggtgcctgcagaaaccaatgagtag

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