Lotus japonicus: 130745601
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Entry
130745601 CDS
T04348
Name
(RefSeq) regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
lja
Lotus japonicus
Pathway
lja03013
Nucleocytoplasmic transport
lja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130745601
03015 mRNA surveillance pathway
130745601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130745601
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130745601
mRNA cycle factors
P-body specific factors
130745601
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
130745601
NCBI-ProteinID:
XP_057453930
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All DBs
Position
3:70724903..70733803
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AA seq
535 aa
AA seq
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MKVRSERERTKVVIRHLPPSLTHSDLIQQIDNHFASRYNWFSFRPGNTSHKHQRYSRAYI
DFKHPNDVFEFAEFFHGHVFVNEKGAQHKALVEYAPSQRVPKPGTKKDGREGSIYKDPDY
LEFLKLIAKPEEHLPSAEIQLERREAEQAGANKEPPVVTPLMEYVRQKRALGSGVQVSSA
ATKISRRARAALPGKPGSGNAKRGSEKKKYVQKDNAKIANRKELRDKSAFIAVPRREDQS
AESSAKGTSEIETLHGIEGPISGIPLTSDSGKKKILLLKGKQREIPNAAEGMVKQQNVQS
GSSLVSTSAKQTQRREGSGRLIRSILQNNEPRQSQSASGTQPKIQILTSENGKRPPRPFI
SRSGLSDQVSSHDAGQVNSEGDSKRVSDEKFIKRDLHGSGSVSEKTERRTRNKDRPDRGV
WAPLRRSDVSHSGNEHPSSSWSQTTLSNPESVEGEVKESVPSGNRSPEFSASAVGRGSPS
VENGSQRNFTRRGASYIVKDEGAVSLSEGKPSKKGVAGNSAHEKQVWVQKSSSGS
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttcgttcggaaagggaaagaaccaaagtggtgattaggcatttacctccatct
ctcactcattctgatctcatccaacaaatcgataaccacttcgcttctcgctacaattgg
ttctcttttcgccccggcaacaccagtcacaagcatcagagatattcccgagcttatatt
gacttcaagcaccctaatgatgttttcgagttcgctgaattctttcatggccatgttttt
gtgaacgaaaaaggtgcccagcataaagcattggttgagtacgcaccttctcaacgtgtt
ccgaagccaggtaccaaaaaggatggtcgtgaagggtctatatacaaagatccagactat
cttgagttcctcaaactcattgcaaaacctgaagaacatcttcctagcgcagaaatacaa
ttggaaagaagggaagctgagcaagccggggctaacaaggaaccacccgttgtcacaccc
cttatggaatatgttcgtcagaaacgtgctcttggtagtggtgtgcaggtttcatcagca
gcaacaaaaattagcagaagagctagagctgctttgccaggcaagcctggctctggtaat
gctaaacggggatctgagaagaaaaagtatgttcagaaggacaatgccaagattgctaat
cggaaagagttgcgagacaagtcagcctttattgcggtaccgcgccgagaggatcaatct
gctgaatcaagtgcgaaaggaacttctgaaattgaaactttgcatggcattgaaggtccc
atttctggaattccactgacttctgactcgggaaagaaaaaaattcttcttctgaaagga
aaacagcgtgaaattccaaatgccgctgaaggtatggtaaaacagcaaaatgtacaatct
ggaagttctctagtttcaacatctgcaaaacagacccaaaggcgtgaaggtagtggaaga
ttgatcagaagcatacttcaaaataatgaacctcgtcaaagtcagtctgcatctggtaca
caacctaagattcaaatcttaacttctgagaatgggaaacgaccacctcgtcctttcatt
tcaaggtctgggttaagtgatcaagtctctagtcatgatgctgggcaagttaattctgaa
ggagattctaaaagggtttcggatgaaaagttcataaaaagagatctgcatggttcaggt
agtgtcagtgagaaaacagaaagacgtactagaaacaaggatagacctgatcgtggtgtt
tgggcacctcttcgtcgttctgatgtttcacattctggtaatgagcacccatcatcctca
tggtcgcaaactactctgtcaaatcctgaatcagttgaaggagaagtaaaagaaagtgtt
ccttcaggaaataggagtccagaattctcagcttctgcagttgggcgtggcagtccttct
gttgagaatggttctcaaagaaattttactcgccgtggagcttcctatatagtgaaggat
gaaggtgcagtgagtttgagtgaaggtaaaccttccaagaaaggtgttgctgggaatagt
gctcatgagaaacaagtttgggtacagaaatcatcttccgggtcttaa
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