Lotus japonicus: 130745817
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Entry
130745817 CDS
T04348
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lja
Lotus japonicus
Pathway
lja03013
Nucleocytoplasmic transport
lja03015
mRNA surveillance pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130745817
09122 Translation
03013 Nucleocytoplasmic transport
130745817
03015 mRNA surveillance pathway
130745817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130745817
03041 Spliceosome [BR:
lja03041
]
130745817
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130745817
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130745817
Spliceosome [BR:
lja03041
]
Complex C
Other components
EJC/TREX
130745817
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130745817
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
130745817
NCBI-ProteinID:
XP_057454188
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All DBs
Position
3:73998385..74004318
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AA seq
426 aa
AA seq
DB search
MGELKDTEAYEEELIDYEEEDEKAPDSAKPAAETAKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVAALVLC
HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALT
RDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLQDSEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSSGDSEVLNQVQSRFEVDIKELPEQIDT
ATYMPN
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaattgaaagacactgaggcttacgaggaagaactcatcgattatgaggaagaa
gatgaaaaagcccctgattctgccaagcccgcggctgaaacagccaaaaagggttatgtt
ggtatacatagttcgggatttcgcgacttcctgttgaaaccagagcttcttcgagctatt
gtagattctggatttgagcatccttcagaagtgcaacatgaatgcatccctcaagcaatt
ttaggaatggatgttatctgccaagcaaaatctgggatgggaaagactgctgtgtttgtt
ctgtcatcacttcagcaaattgatcctgttcctggtcaagttgcggcccttgttctttgc
cacacgagggaactagcttatcagatttgccatgaatttgagaggttcagcacatatctt
cctgatataaaagttgctgttttctatggaggtgtcaatatcaaggttcacaaagaattg
ctcaagaatgaatgtccccatattgttgttggaacacctgggaggattcttgctctgact
agagacaaggaccttggtttgaagaatgtgaggcattttatacttgatgagtgcgacaag
atgcttgaatcacttgatatgagaagagatgtgcaagagattttcaaattgactccccat
gataaacaagtgatgatgttttcagctacactcagcaaagagatacgacctgtttgcaag
aagtttatgcaagatcccatggaaatatatgttgatgatgaggccaagttgaccctccat
ggtcttgttcagcactatatcaaattgcaagattcagagaagaatcgtaagttgaatgat
cttcttgatgctcttgacttcaaccaagttgttatttttgtcaagagtgtaagcagagca
gcagaattgaacaagttgcttgtggagtgtaatttcccgtcaatctgcatacattctgga
atgtcacaggaagaaaggttgaaacgatacaaaggtttcaaagaggggaagcaaaggatt
cttgtggcaacagatttagtaggaagggggattgatatagaacgtgttaatatagtcata
aactatgacatgcctgattctgctgatacttatctacacagggttggaagagctggcaga
tttgggaccaaggggcttgcaattacttttgtgtcttcttccggtgattctgaagttctt
aatcaggtgcaatctcggtttgaggttgatataaaggagcttcctgaacaaattgacact
gccacatatatgccaaactga
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