Lotus japonicus: 130747068
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Entry
130747068 CDS
T04348
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
lja
Lotus japonicus
Pathway
lja03030
DNA replication
lja03410
Base excision repair
lja03420
Nucleotide excision repair
lja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130747068
03410 Base excision repair
130747068
03420 Nucleotide excision repair
130747068
03430 Mismatch repair
130747068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lja03032
]
130747068
03400 DNA repair and recombination proteins [BR:
lja03400
]
130747068
DNA replication proteins [BR:
lja03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
130747068
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
130747068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
RCF1-5-like_lid
AAA_19
PTCB-BRCT
AAA_22
Rad17
AAA_30
RuvB_N
Sigma54_activ_2
nSTAND3
AAA_33
AAA_assoc_2
AAA_5
BRCT_2
AAA_16
Zeta_toxin
AAA_14
Gp44_lid
TsaE
AAA_18
RNA_helicase
AAA_17
NPHP3_N
NTPase_1
AAA_24
DNAX_ATPase_lid
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
130747068
NCBI-ProteinID:
XP_057455870
LinkDB
All DBs
Position
3:complement(88570076..88577797)
Genome browser
AA seq
959 aa
AA seq
DB search
MSDIRKWFMKSHEKANNAAAPKPSNPPKPSSAVKPDPDKTVPEGQGSSGRKITSKYFNKD
KQKPKDEKETQELPAKRKNGKDCEELPESRPLKKIHKADEDEGDDDCVLVAGKKKVADST
PTKKLKSGSGRGVPKKSADLEEDDEDDGKEAATPAKSGGRGRGGRGASAQAAGGRGRGGG
GRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLVKRHGGRV
TGSVSKKTNYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDMIRASKPSKATSQEECKKPL
NKAVAVAPQTKSAPKAEAKVSLSSRSPSNQFKLKTATATQYSLTWTEKYRPRDPKDIIGN
QSLVSQLRNWLKAWHEQFSVSGNKKHGKKQSDSGAKKAVLLSGTPGIGKTTSAKLVCQEL
GFQAIEVNASDSRGKADGKIEKGISGSNANTMKELVTNEALGINMDRSKLSKTVLIMDEV
DGMSAGDRGGVADLIASIKMSKVPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKR
LMDVAKAEGLQVNEIALEELAERVNGDMRMALNQLHYMSLSMSVINYDDIRKRLLNNAKD
EDISPFTAVDKLFGFNAGRLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGEDDSGIK
RMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSVASCIIPAALLHGQRETLEQGERNF
NRFGGWLGKNSTMGKNMRLLDDLHVHILASRESSSGRDTIRLEYLTLFLKQLVEPLRVLP
KAEAVQKVVDFMNTYSISQEDFDTIIELSKFKGHPNPLDGIQAAVKSALTKAYKEQSKSR
MVRAADLVTLPGIKKAPKKRIAAILEPNDEAEQVDGDTLDESEEENTSDTEDLGTTTGEK
LQSELQSLNSKATQVQLELKGTEKSSSNKTSGGRGRGRGASASAQKDAPASRAAAKRKR
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacatacgaaagtggttcatgaaatcacatgaaaaggcaaacaatgccgctgct
cccaaaccttccaatccacccaagccttcttctgcggtcaaacccgacccggacaaaacg
gtgccggaaggtcaaggaagttcagggagaaagataactagcaaatattttaataaagat
aaacaaaagccgaaagatgagaaagaaacccaggagctccctgctaagagaaagaatggg
aaggactgcgaggagttaccggagtctcgtcctttgaagaaaattcacaaagctgatgag
gatgagggagatgatgactgtgtcttggtggctggtaagaagaaggtagctgattccacg
ccaacaaagaaattgaagagtggatcgggtaggggggtccccaagaaatctgcggatttg
gaagaagatgatgaagatgatgggaaagaagctgccactcctgctaaatctggcggaagg
ggtcgtggtggaagaggagcatcagcacaagcagctggtgggagaggtagagggggtggt
ggtaggggtggattcatgaattttggagaaagaaaagatcctccacacaagggagaaaag
gaagtccctgaaggtgctcctgactgtttagctggtttaactttcgtaatcagcggaaca
ctggacagtttggaacgagaagaagcagaagatttggttaaacgccatggtggccgtgtc
actggatcagtcagcaagaaaacgaattatttgttatgtgatgaagatattgggggacgg
aagtccgaaaaagctaaagagctaggaacaaaattcctcacagaggatgggttgtttgat
atgattcgtgcatcaaaaccttcaaaagctacctcacaagaagaatgcaagaaacctctg
aataaggctgttgcagtagcaccccagacaaaaagtgccccaaaagctgaagcaaaggtc
tctttgtcttcacgctcaccttccaaccaattcaagctgaagacagcaactgctactcag
tattctttgacgtggacagagaaatatcggcctagagatccaaaggatatcatagggaat
cagtcacttgtgtctcaacttcgaaattggttaaaagcttggcatgagcaattttcggtt
tctggtaacaaaaaacatggaaaaaagcaaagtgattcgggtgccaaaaaagctgttttg
ttaagtggaacccctggtataggaaaaacaacttcagcaaagttggtctgtcaggagctt
ggtttccaggccatagaggtgaatgctagtgatagccgtggaaaagctgatggcaaaatt
gaaaaaggaattagtggaagcaatgcaaatactatgaaggaacttgtaaccaatgaggct
ctcggcattaatatggatcggtcaaagctttccaaaactgtgcttattatggatgaggtt
gatgggatgtcagctggtgataggggtggtgttgctgatctcattgccagcatcaagatg
tcaaaagttcctattatttgcatttgcaatgaccgttacagccagaaactgaaaagcctt
gtgaactactgtttgcttcttagttttcggaagcctacaaagcaacagatggcaaagaga
ttgatggatgttgcaaaggctgaagggcttcaagttaatgagattgctcttgaggaacta
gcagaaagagttaatggagatatgcgcatggcactaaaccagctacactatatgagcctc
tccatgtcagttatcaactacgatgatattaggaagcgcttacttaacaatgcgaaggat
gaagacatttcaccattcacagctgttgataagctttttggttttaatgctggaaggttg
agaatggatgagagaattgatcttagcatgagtgatcctgatcttgtccctcttcttatc
caggaaaattatattaattatagaccaagctcggccggtgaagatgacagtggtataaaa
cgcatgaacctgattgcccgagctgctgagtctattgctgatggggacatagtgaacgtt
cagattcgcagatatcgacagtggcagctctctcaaactagttctgttgcatcatgtata
attcctgctgcattattgcatggacaacgggaaacacttgaacagggagagcggaatttt
aatcggtttggtggatggctgggtaagaactcaacaatgggtaaaaacatgaggcttttg
gatgatctgcatgttcacattcttgcatctcgtgaatctagctctggaagggatactatt
cgcttggaataccttaccctttttcttaaacaattggtagaacctcttcgagtcctgcct
aaggctgaagctgttcagaaagttgtggactttatgaatacttactcaatcagtcaggaa
gactttgatactataatcgagttatcaaaattcaagggtcatcctaatccgctagatggc
atacaggctgctgttaagtcagccttgacaaaagcatacaaagagcaaagcaaatctcgg
atggttcgagctgcagatctagtcactcttcctggaataaagaaggcacctaagaagcga
attgctgctattctagaaccaaatgatgaagcagaacaagttgatggtgacaccttggat
gagagtgaagaagagaacacctctgacacagaggatttgggcaccaccactggtgagaag
ctgcagtcagaacttcaaagtttgaattcaaaggccacgcaagtacaattggagttgaag
ggaacggaaaaatcgagttccaataagacatccggtggtagaggtagaggtagaggtgct
tctgcatctgcgcagaaggatgctccagcttcaagagctgctgcaaaaagaaagaggtga
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