KEGG   Lotus japonicus: 130747174
Entry
130747174         CDS       T04348                                 
Name
(RefSeq) histone deacetylase 9
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
lja  Lotus japonicus
Pathway
lja03082  ATP-dependent chromatin remodeling
lja03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    130747174
   03083 Polycomb repressive complex
    130747174
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lja03036]
    130747174
Enzymes [BR:lja01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     130747174
Chromosome and associated proteins [BR:lja03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     130747174
   HDAC complexes
    Sin3A-HDAC complex
     130747174
    BRAF-HDAC complex
     130747174
    REST complex
     130747174
    SHIP complex
     130747174
    MiDAC complex
     130747174
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     130747174
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    130747174
  Chromatin remodeling factors
   NuRD complex
    130747174
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 130747174
NCBI-ProteinID: XP_057456009
LinkDB
Position
3:complement(89694711..89700300)
AA seq 429 aa
MRSKDRIAYFYDGDVGSVYYGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTQHLFTNELAKYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDAKEIGEREGKYYAINVPLKDGIEDPSFTRLFKT
IISKVVETYQPGVIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKRFNLPLLVVGGGGY
TKENVARCWTLETGVLLDTELPNEIPDNDYIKYFGPDFSLKIPHGHIENLNSKSYLSTIK
MQVLENLRCIQHAPSVQLQEVPPDFYIPDFDEDEQNPDERIDQHTQDKHIQRDDEYYEGD
NDNDQMDAP
NT seq 1290 nt   +upstreamnt  +downstreamnt
atgcgctccaaggacagaatcgcctacttctacgacggcgatgtgggaagtgtttactac
gggccaaatcatccgatgaagccgcatcggctttgcatgactcatcatctcgttctctca
tacgaccttcataagaagatggaaatttatcgcccacataaggcttatcctgtcgaactt
gcccaattccattcagctgattatgttgagtttttgcacaggattacgcctgacactcag
cacctgttcacaaatgagctggcaaaatataatcttggagaagactgccctgtatttgac
aacttatttgaattttgtcagatttatgctggtggaactatagatgctgcacgtcgttta
aacaatcaactgtgtgatattgctataaactgggctggtggactacatcatgccaagaaa
tgtgaggcatctggcttttgttacatcaatgacctggttttaggaatcttggagcttctt
aaatatcatgctcgggttttgtatattgatatagacgtgcaccatggtgatggtgtggaa
gaagccttctacttcactgacagggtgatgactgtcagttttcacaagtatggagatatg
ttctttccgggtactggtgatgccaaggaaataggagaaagagaagggaagtattacgcc
ataaatgtcccactcaaggatggaatagaggaccctagcttcactcgacttttcaagact
attatttccaaagtagttgaaacatatcaacctggtgtgatagttctccaatgtggagct
gattctcttgctggagatcgcttgggctgcttcaatctctctattgatggtcatgctgaa
tgtgttagatttgtaaagagattcaacttgcccttactggtagttggaggtgggggatac
accaaagaaaatgttgctcgatgttggacacttgaaactggagttcttctagatacagag
cttccaaatgagatcccggacaatgattatattaaatattttgggccggacttctcgttg
aagataccacatgggcacatagagaatttaaatagcaaatcatatcttagcactattaaa
atgcaagtcttggaaaatcttcggtgcatccaacatgctccaagtgtacaactgcaagag
gtcccacctgatttctacattcctgatttcgatgaagatgagcagaaccctgatgagcgc
attgatcagcacactcaagacaagcacatccagcgcgatgatgaatattatgaaggtgac
aatgacaatgatcaaatggatgcgccatga

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