Lotus japonicus: 130747200
Help
Entry
130747200 CDS
T04348
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
lja
Lotus japonicus
Pathway
lja04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130747200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lja04131
]
130747200
Membrane trafficking [BR:
lja04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
130747200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
zf_RING_Vps8
WD40_WDHD1_1st
Beta-prop_HPS5
WD40
zf_RING_Vps8_fungal
Beta-prop_WDR11_2nd
WD40_Prp19
WDR55
Beta-prop_EML_2
zf-RING_2
EIF3I
CENP-B_dimeris
Beta-prop_WDR90_POC16_2nd
PEP5_VPS11_N
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
130747200
NCBI-ProteinID:
XP_057456039
LinkDB
All DBs
Position
3:complement(90004401..90014617)
Genome browser
AA seq
948 aa
AA seq
DB search
MAPISSENGVEGDDEREEQEEEDEEDDEEEPRLKYQRMGGSVPSLLAADAASCIAVAERM
IALGTHAGTVHILDFLGNQVKEFSAHASVVNDLNFDIEGEYIGSCSDDGSVVINSLFTDE
KMKFEYHRPMKAIALDPEYARKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGSIHA
VKWRASLVAWANDAGVKVYDTANEQRVTFIERPRASPRPELLLPHLVWQDDTLLVIGWGT
SIKIASIKTNSYKAVNGTFRQVPLSSMTQVDIVASFQTSYFISGIAPFGDALVVLAYIPG
EEDGDKDFSSTAPSRQGNGQRPEVRIVTWNNDELSTDALPVHGFEHYKAKDYSLAHAPFS
GSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRS
ELLDEVGSRYLDHLIVERKYGEAASLCPKLLQGSASAWERWVFHFAHLRQLPVLVPYMPT
ENPRLRDTAYEVSLVALATNPSFHKDLLSTVKSWPSVIYSALPVISAIEPQLSTSSMTDS
LKEALAELYVIDGQYEKAFSLYADLMKPEVFDFIDKHNLHDAIREKVVQLMMLDCKRAVP
LLIQNRDITSPPEVVKQLIRADNNCDCRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADY
DPKMLLPFLRSSQHYTLEKAHEICIKRDLMREQVFILGRMGNSKQALAIIINKLGDIEEA
VEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRL
VKIITDYRTETSLRHGCNDILKADCVNLLIKYHKEARHGISLGNEEDEPRIKMSSTHAFQ
VSDKSPSLRIMEVKSKTRGGGRCCICFDPFQIQSVSVIVFFCCHGYHTTCLTDSSYTIST
KKAIEVTSQEAETYDSYNGYVDDASDDDNEANSGCPRLRCILCTTATG
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggctccgatttcgtcggagaacggcgtcgaaggagacgatgagagagaagaacaagaa
gaagaagatgaagaagacgacgaagaagagccgaggctcaagtaccagagaatgggaggc
agcgtgccttcactcttagccgccgatgccgcctcgtgtatcgccgtcgcggagcggatg
atcgcactcggaactcacgccggcaccgttcacatcctcgattttcttggaaatcaggtg
aaagaattctctgcacatgcttctgttgtcaacgacctgaactttgacatagaaggtgaa
tatattggaagctgttctgatgatggttcagttgttataaacagccttttcactgatgag
aaaatgaaattcgagtaccatcgccctatgaaggcaattgcgttggaccccgaatatgcg
aggaaaatgtctaggaggtttgttgctggtggtttagctggtcatttatatttaaattcc
aagaaatggttgggctatcgtgaccaggttttgcactctggtgaaggttcaatacatgcg
gttaagtggagagcgagccttgttgcttgggctaatgatgcaggagtgaaggtttatgat
actgccaatgaacagcgcgtaacgtttattgaaagaccacgagcgagcccgcgccctgag
cttttgcttcctcatcttgtctggcaggatgacactctcttagttattggctggggaaca
tcgatcaaaattgcttctataaagacaaatagctataaagcagtcaatgggacattcagg
caagttcctttgtccagtatgacccaggtggatattgtggcgtctttccagacgagctat
ttcatctcaggaattgccccctttggtgatgctttggttgttctagcctatattcctgga
gaagaagatggagataaggattttagtagcactgctccttcacggcagggcaatggacaa
agaccagaagtaagaatcgtaacatggaataatgatgaactttcaacggatgctctacca
gtgcatgggtttgagcattacaaggcaaaggactattctcttgctcatgctcccttctca
ggcagcagttatgctggtggtcagtgggctgcaggtgatgaaccactatactatattgta
tccccaaaggatgtagttattgcaaaaccaagggatactgaagaccatattgcttggctt
cttcaacatggatggcacgaaaaagctttagcagtggttgaatctggccagggacggagt
gaactacttgatgaggtgggatctaggtaccttgatcatctgattgtggaaagaaaatat
ggtgaagcagcttctttgtgtcctaagttactgcaaggatcagcttcagcatgggaaagg
tgggtctttcactttgctcaccttcgtcaactccctgttttggtcccttacatgcctaca
gaaaaccccagactacgagatactgcttatgaggtttctcttgttgcattggctacaaat
ccatcttttcataaggatctcttgtccactgtaaaatcctggccatctgtaatttattct
gcattacctgttatttcagctattgaacctcagctaagcacttcctccatgactgattcg
ctcaaggaggcattagcggagttgtatgtaatcgatgggcaatatgagaaagccttctca
ttgtatgctgatctcatgaagccagaagtgtttgatttcattgataaacacaacctacat
gatgcaattcgtgaaaaggttgtccaactgatgatgctagattgcaaacgtgcagttcct
ctgttgatccagaatagggacataacaagtccacctgaggttgtgaagcagcttataaga
gctgataataattgtgactgcagatattttttacatttatatctacattcattatttgaa
gtaaatccacatgctgggaaagacttccatgatatgcaggtagaactgtatgctgactat
gatccaaagatgctgctaccttttcttcgtagcagtcaacactatacccttgagaaggca
catgaaatttgcattaaaagagacctaatgagggagcaagtcttcatcttaggaaggatg
gggaactcaaaacaagccctcgccattattataaataaattgggggatatagaggaggct
gtagagtttgttaccatgcagcatgatgatgaactctgggaagaactaatcaagcaatgc
cttcacaagcctgagatggtgggcatactattggagcacacagttggaaatcttgatccc
ctctacattgtaaataaggttcctaacgggttggaaatacctaggctcagggatcggctg
gttaaaattatcactgattacaggactgaaacatcgctcagacatgggtgcaatgatatc
cttaaggcggactgtgtcaaccttctaattaagtatcacaaagaggcaaggcatggaatt
tccttaggtaatgaagaagatgagccacgaatcaaaatgagcagtacccatgcttttcag
gtatctgacaaatccccaagcctgagaatcatggaggtgaagtcaaagactaggggaggt
ggaagatgttgcatatgttttgacccatttcaaatacagagtgtatcagtcattgttttc
ttttgctgtcatggttatcacacaacttgtctcacggattcgtcctacacaattagtacc
aagaaagcgattgaagtcacttcccaagaggcagaaacgtatgacagctacaatggttat
gtggatgatgctagtgatgatgataatgaagccaattcaggttgtcctcgcttgcgttgt
atattgtgtactactgctactggttga
DBGET
integrated database retrieval system
