Lotus japonicus: 130747244
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Entry
130747244 CDS
T04348
Name
(RefSeq) cell division cycle protein 48 homolog isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lja
Lotus japonicus
Pathway
lja04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130747244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130747244
03009 Ribosome biogenesis [BR:
lja03009
]
130747244
04131 Membrane trafficking [BR:
lja04131
]
130747244
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lja04147
]
130747244
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
130747244
Ribosome biogenesis [BR:
lja03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
130747244
Membrane trafficking [BR:
lja04131
]
SNARE
SNARE associated proteins
Others
130747244
Autophagy
Aggrephagy
Other aggrephagy associated proteins
130747244
Exosome [BR:
lja04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
130747244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_2
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_22
TIP49
AAA_14
NPHP3_N
nSTAND3
Mg_chelatase
RNA_helicase
Vps4_C
AAA_17
AAA_28
Parvo_NS1
IstB_IS21
NACHT
AAA_18
TsaE
AAA_7
ABC_tran
AAA_24
DUF815
Zeta_toxin
AAA_lid_PRS2_C
Zot
Motif
Other DBs
NCBI-GeneID:
130747244
NCBI-ProteinID:
XP_057456098
LinkDB
All DBs
Position
3:90505708..90510184
Genome browser
AA seq
810 aa
AA seq
DB search
MSNHVESSSSDPKPGKKDFTTAILERKKSPNRLVVDESINDDNSVVAMHPLTMEKLQLFR
GDTILIKGKKRRDTVCIALADESCEEPKIRMNKVLRSNLRVRLGDVVSVHQCADVKYGRR
VHILPLDDTIEGLTGNLFDVYLKPYFLEAYRPVRKGDLFLVRGMRSVEFKVIETDPGEYC
VVAPDTEIFCEGEPVRREDEERLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGV
KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEK
NAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKARAHVIVMGATNRPNSIDP
ALRRFGRFDREINIGVPDEVGRLEVLRIHTKKMKLSDDVDLEKIAKNTHGYVGADLAALC
TESALQCIREKMDVIDLEADTIDAEVLNSMAVTNEHFHTSLETSNPSALRETVVEVPNVS
WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGNGKTMLAKAIANEC
QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCILFFDELDSIATQRGNSVGDAGG
AADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRHQ
IFKACLRKSPVEKEVGLRALAKYTQGFSGADITEICQRACKYAIRESIEKDIERDRKRKE
HPEAMDEDIEGEGEVAEMIKAAHFEESMKFARRSVSDADIRKYQSFAQTLQQSRGFGSEF
RFPATGGRTVGTADAFATSAGGADEEDLYS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccacgtcgagtcatcatcatcggacccgaaaccggggaagaaagatttcact
acggcgattcttgaacggaagaagtcaccgaaccggttagtcgttgatgaatccatcaac
gacgacaactcagtggtggccatgcaccctttaaccatggaaaaactccaactcttccgg
ggagacactatcctcatcaaggggaagaaacggagggacactgtttgcattgctcttgct
gatgagtcatgtgaggagcctaagataaggatgaacaaagttttgaggtctaatttgagg
gttcgtcttggagatgttgtgtctgtgcaccagtgcgctgatgttaagtatgggaggcgt
gttcacattctgcctcttgatgataccattgaagggcttactgggaatctgtttgatgtt
tatttgaaaccttatttcttggaggcttatcgtccagtcagaaaaggagatctatttctt
gtccgagggatgagaagtgtagagttcaaggtcattgaaaccgatcctggggagtattgt
gtagttgctccagacactgaaatattctgtgagggggagcctgtgagaagggaggatgag
gaaaggctggatgaaattgggtatgatgatgtgggtggtgtcaggaagcaaatggcacag
attcgtgagttggtagagcttccactgaggcatccacaactttttaaatcaattggtgtg
aaaccacccaaaggaattttgctgtatggacccccaggttctggtaagacattgatagca
agagctgtagctaatgaaactggagcattcttcttttgtattaatggtccagagattatg
tccaaacttgctggagagagtgagagcaatctcagaaaagcatttgaagaagcagaaaag
aatgctccctcaattatctttattgatgagattgattctattgcacccaagcgggagaag
acaaacggggaagttgaacgccgtatagtctcacagcttttgactcttatggatggatta
aaggctcgtgctcatgttatagttatgggagctacaaatcgtccaaatagcattgaccca
gccttgagaaggtttggtagatttgatagggaaattaacattggggttccggacgaggtt
gggcgacttgaagtccttcgcatacataccaaaaagatgaagctttctgatgatgttgat
ttagagaaaattgcaaaaaatactcatggttatgttggtgccgaccttgctgctctttgc
actgaatctgctctgcaatgcattagggagaagatggatgtcattgatttagaagctgat
actattgatgctgaggtgttgaattctatggcagttacaaatgagcatttccatacttct
ctagaaacaagcaatccgtctgctttacgggaaactgttgttgaggtgcctaatgtcagt
tgggaagatattggaggccttgagaatgtcaagcgcgagctgcaagagactgttcaatat
cctgtggagcacccagaaaagtttgagaagtttggtatgtcaccatcaaaaggagtcctc
ttctatggacctccaggaaatgggaaaactatgttggccaaggcaatagctaatgaatgc
caagctaacttcatcagcgtgaaaggcccagaattgcttactatgtggtttggcgaaagt
gaagccaatgttcgagaaatttttgacaaggccagacaatctgctccatgcatcctcttc
tttgatgagcttgattccattgccactcagagaggaaatagtgttggggatgctggtggt
gctgctgatagagttctaaatcaacttctgactgaaatggatggtatgtctgccaaaaag
actgtgttcataattggggcaaccaacagacctgacatcattgattcagcacttctacga
cctggccgtctagatcaattgatctatattcctcttcctgatgaggactcccgtcatcaa
atcttcaaggcctgcttgaggaagtcacctgtagagaaagaagttgggttgagagctcta
gctaagtatactcaaggcttcagtggtgctgatataacagagatatgccagcgagcttgc
aaatatgctataagagaaagcatagaaaaggacattgagagagaccggaagagaaaagaa
catcctgaggccatggatgaagacattgagggagagggagaggttgctgagatgatcaag
gctgctcattttgaagagtcaatgaagtttgcgcgaaggagtgttagtgatgctgatata
cgcaagtatcagtcatttgctcagaccttacagcagtcccggggttttggaagtgaattc
agatttcctgcgactggaggcaggaccgtcggaactgctgatgctttcgcaacttctgct
ggtggggctgatgaagaggatctgtatagttag
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integrated database retrieval system
