Lotus japonicus: 130747585
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Entry
130747585 CDS
T04348
Name
(RefSeq) WD-40 repeat-containing protein MSI2-like
KO
K10752
histone-binding protein RBBP4
Organism
lja
Lotus japonicus
Pathway
lja03082
ATP-dependent chromatin remodeling
lja03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130747585
03083 Polycomb repressive complex
130747585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lja03036
]
130747585
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
130747585
Histone modification proteins
HAT complexes
HATB complex
130747585
HDAC complexes
Sin3A-HDAC complex
130747585
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
130747585
PRC2.2
130747585
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
130747585
Heterochromatin formation proteins
Other heterochromatin formation proteins
130747585
Chromatin remodeling factors
NuRD complex
130747585
NuRF complex
130747585
NuRF complex (fruit fly)
130747585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
Beta-prop_EIPR1
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
WD_LRWD1
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_WDR75_1st
Beta-prop_RIG_1st
MIOS_WD40
Beta-prop_SPT8
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR35_TULP_N
WD40_RFWD3
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_NUP159_NUP214
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
130747585
NCBI-ProteinID:
XP_057456540
LinkDB
All DBs
Position
3:93677223..93679667
Genome browser
AA seq
407 aa
AA seq
DB search
MAEEHENAQTEAEVEEEFSVWKKNTPLLYDFFISHPLVWPSLTVQWLPSTPQPHSNSSFN
LHSILLATHTADDEPNFLMLGQVTLPVNTLQPIVAADPQNPILPKVEITRRIPVDGEVNR
ARSMPQNADIVAAKTCSSEVYVFDFAKQRGDGNEPDLRLRGHDKEGFGLSWSPFKSGYLL
SGSNDHKVCLWDVPADSKGSVLDAVHVYEGHENVVEDVSWHLKNENLFGSVGDDCKLVIW
DLRTNKAQQSVKSHEKEVNFLSFSPYNEWILATASSDTTIGLFDTRKLMEPVHVLSSHTD
EVFQVEWDPNHETVLASSGADRRLMVWDINRVGDEQIEGDGEGGPPELLFSHGGHKGKIS
DFSWNQNQPWVISSVDEENSLHVWQMADSIYNDGDDEDMWYAANDQH
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagagcacgagaatgcacagacagaggcagaggttgaagaagagttctccgtt
tggaagaagaacactcctctgttgtacgatttcttcatctctcaccctcttgtatggcct
tctctcaccgttcaatggctcccatccactcctcaaccccactccaactcttccttcaac
ctccactcaatcctcttagccacccacaccgccgacgacgaacccaacttcctaatgctc
ggccaagtcaccctccctgtaaacacattgcagcccatcgtcgccgctgatcctcaaaac
cccattttacctaaggtggagattacccggaggattcctgttgatggggaggtgaatcga
gcgcgatccatgccgcagaacgctgatattgtagctgccaagacttgtagctccgaggtt
tatgtgtttgattttgcgaagcaacgaggggatgggaatgagcctgatttgaggttgagg
gggcatgataaggaaggctttggcttgtcctggagcccttttaagagtgggtatcttttg
agtggttcaaatgaccacaaggtttgcttgtgggatgtgccggctgattcgaaagggagc
gtgcttgatgcggttcatgtttatgagggccatgaaaatgtggtggaagatgtatcctgg
catttgaagaatgaaaatttatttgggtctgttggggatgactgcaagttggtaatttgg
gacctgcggacaaacaaagcccaacaatctgtcaaatcacatgagaaggaggtgaacttc
ctttctttcagtccatataatgaatggattttggctacagcatcctcagacaccaccatt
ggtctctttgatacacggaagctgatggaaccggttcatgttttaagtagccacacagat
gaggtattccaggtagagtgggatcctaatcacgagactgtattggcttcttctggtgct
gacagacggctgatggtttgggacattaacagggttggggatgagcagatagagggagat
ggtgagggcggtcctcctgaactactcttctctcatggtggtcacaaagggaaaatatca
gatttttcatggaaccaaaaccagccatgggtcatctcaagtgtagatgaggaaaattct
ctccatgtctggcaaatggctgatagcatttacaatgatggtgacgacgaagatatgtgg
tatgctgctaatgaccaacactaa
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