KEGG   Lotus japonicus: 130748309
Entry
130748309         CDS       T04348                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
lja  Lotus japonicus
Pathway
lja03018  RNA degradation
lja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130748309
  09123 Folding, sorting and degradation
   03018 RNA degradation
    130748309
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lja03019]
    130748309
   03041 Spliceosome [BR:lja03041]
    130748309
Messenger RNA biogenesis [BR:lja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     130748309
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     130748309
Spliceosome [BR:lja03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    130748309
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 130748309
NCBI-ProteinID: XP_057457471
UniProt: I3SC15
LinkDB
Position
3:complement(6170802..6174868)
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT
TAQTRSLGLIVCRGTAVMLVSPTDGTDEIENPFIQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtcagggaggaaagaaacggttctggacttggccaaattcgttgacaaaggtgttcaa
gttaagctcactggtggcagacaagtgacaggaactctgaaagggtatgaccagttacta
aaccttgtcctggatgaagctgttgaatttctgagagatcctgatgatccactgaaaact
acagctcagaccagaagtcttggcttaattgtttgtagaggaactgctgtcatgcttgtt
tccccaactgatggtacagatgagattgagaacccctttattcagcccgatggggcctaa

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