Lotus japonicus: 130748309
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Entry
130748309 CDS
T04348
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130748309
09123 Folding, sorting and degradation
03018 RNA degradation
130748309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130748309
03041 Spliceosome [BR:
lja03041
]
130748309
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130748309
mRNA degradation factors
5'-3' decay
Lsm complex
130748309
Spliceosome [BR:
lja03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130748309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
130748309
NCBI-ProteinID:
XP_057457471
UniProt:
I3SC15
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Position
3:complement(6170802..6174868)
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT
TAQTRSLGLIVCRGTAVMLVSPTDGTDEIENPFIQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggaggaaagaaacggttctggacttggccaaattcgttgacaaaggtgttcaa
gttaagctcactggtggcagacaagtgacaggaactctgaaagggtatgaccagttacta
aaccttgtcctggatgaagctgttgaatttctgagagatcctgatgatccactgaaaact
acagctcagaccagaagtcttggcttaattgtttgtagaggaactgctgtcatgcttgtt
tccccaactgatggtacagatgagattgagaacccctttattcagcccgatggggcctaa
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