Lotus japonicus: 130748334
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Entry
130748334 CDS
T04348
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
lja
Lotus japonicus
Pathway
lja03013
Nucleocytoplasmic transport
lja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130748334
03015 mRNA surveillance pathway
130748334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130748334
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130748334
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_5
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
130748334
NCBI-ProteinID:
XP_057457502
LinkDB
All DBs
Position
3:complement(18517611..18522838)
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AA seq
425 aa
AA seq
DB search
MAKPGRGRRSPPSGSVSGSSSRSSSPSSSRSSSRSRSLSRSRSFSSSSSSPSRGGSRSRS
PPPQRRKSPVEAARRGRSPPPSKRASPPSKRASPPPRKPSPTRESLVLHVEKLSRNVNEG
HLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLYMDGAQIDGNVIKAR
FTLLPRQKVSPPPKPSALAPKREAPRTDNAGADIEKDGPKRQRESSPRRKPPPSPRRRSP
VPRRVGSPRRPDSPRRRVDSPVRRRLDSPYRRGGDTPPRRRPVSPGRGRSPSPPRRLRSP
ARVSPRRLRGSPGRRRSPPPPPRRRSPPPRRARSPPRRSPIGRRRSRSPIRRPARSNSRS
FSPRRGRPPVRRGRSSSFSDSPSPRKVSRRSRSRSPRRPLRGGRASSNSSSSSSPPPPPP
PARKP
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacctggccgaggccgtcgttcgccgccgtcgggttccgtttccggctcctcc
tctcgctcctcctccccgtcctcttctcgctcatcatctcgctcccgctcgctctcgcgc
tccagatctttctcttcctcctcctcttctccttcccgcggcggttcccgcagccgcagc
cctcctcctcagcggcggaaaagtcctgttgaagcagctaggcgaggtcgatctcctcct
ccttctaagagagcttcccctccttctaagagagcttctcctcccccaaggaaaccttct
cctacacgtgaatcacttgttctgcacgtagaaaaactcagcaggaatgtcaatgaaggc
catttgaaagaaattttcagtaactatggtgaggttgtaagtgtggagttggcgatggat
cgaattgtgaatcttccaaaaggatatgcatatgtgcaattcaaggcaagaggggatgca
gaaaaagcattgttgtacatggatggtgcccaaatagatggcaacgtcattaaggcaaga
tttactctacttccaagacagaaagtttcaccaccccctaagccttctgctcttgctccg
aagagagaggcccctaggactgacaatgctggtgctgatattgaaaaggatgggccgaag
cgtcaaagagaatcttctcctcggagaaaaccccctccctcaccacggaggaggtctccc
gtgcctcgaagagttggatctccaagacgaccagattctcctcgccgtcgtgtggattct
cctgtccgtcgtcgactagactctccttatcgtcgtggaggtgacacacctcctaggagg
aggcctgtgtctcctggaagaggtcgctctccatctccaccaaggcgcctaagatcacct
gcaagggtttcacctagaaggttgcgtggaagccctggtcggagacgttctcctcctcct
cctccaaggcgccgttcaccacctcctagacgagctcgtagtcctcctagaaggtctccc
atcggtcgtaggcgcagtcgctctccaatacgtaggcctgcacgctcaaactcaagatca
ttctcacctcgcagaggtcgaccacctgttagacgggggagatcatcatccttctctgac
tcaccaagtccacggaaggtatctcggagatcaaggagtcgcagtcctagaaggcctttg
agaggaggaagagccagtagcaacagtagcagtagcagttcaccaccaccaccaccacct
cctgctcgcaaaccttag
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