Lotus japonicus: 130748456
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Entry
130748456 CDS
T04348
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130748456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130748456
03009 Ribosome biogenesis [BR:
lja03009
]
130748456
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130748456
Spliceosome [BR:
lja03041
]
Complex A
U1 snRNP components
U1 related factors
130748456
Complex B
130748456
Ribosome biogenesis [BR:
lja03009
]
Eukaryotic type
Pre-60S particles
Helicases
130748456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Motif
Other DBs
NCBI-GeneID:
130748456
NCBI-ProteinID:
XP_057457657
LinkDB
All DBs
Position
3:complement(2749755..2754107)
Genome browser
AA seq
503 aa
AA seq
DB search
MSRYDSRSADPSSYRDRRSDSGLGAPAASTGYGGSSIKNHDDGGSGSPRKINLDGLSHFE
KNFYTESPSVRAMTEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFV
EPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAP
TRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH
HTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLY
DPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVSPDLAAMGRG
APPPPSGGFRDRGKGYGSGRPWS
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctacgacagccgctccgccgacccctcttcataccgtgatcgaagaagtgat
tctgggctgggtgcacctgctgcctccaccgggtacggtggttcgagcataaagaatcat
gacgacggtggttcagggtcgccccgtaagataaatttggatgggttgtcgcatttcgag
aaaaacttctacactgaatcaccctctgttagggcaatgactgaagcagaggttgatgag
tatcgcctgcgacgggaaatcacagttgaaggccgagatgttcccaaacccgtcaagaca
tttaacgatgtcggttttccagagtatgtgttggaagaagttaagaaagctggctttgtt
gaacctacacccattcagtcacaaggttggccaatggctttgaaggggcgtgatctgata
ggaattgcagaaaccggttcagggaagacacttgcgtacttgttgcctgctattgtgcat
gttaatgcgcagccaattctagaccctggcgatggacctattgtgttagtattggcccca
acacgtgaacttgctgtccaaatacaacaagagtgtactaagtttggtgcatcgtcaagg
attaagagtacgtgcatatatggtggggttccaaaggggcctcaggtgcgtgatctccag
aaaggcgttgaaatcgttattgccactccgggaaggttaattgatatgcttgagtcacat
catactaacttgcgaagggtcacatatctggtattggatgaagctgataggatgttggac
atggggtttgatcctcagatacggaagattgtctcacagattcgtcctgaccgtcaaact
ctgtactggagtgctacctggccaaaggaggttgaacaattggcaaggaagttcctttat
gatccatacaaagtaattataggttctgaggatttaaaagctaaccatgctataaagcaa
tatgttgacatagttcctgaaaagcagaaatatgataaattggtgaagttgctggaggac
atcatggatggcagccgaatattgatattcatggatactaagaaagggtgtgatcagatt
actaggcagcttcgtatggacggttggcctgcactttcaattcatggagataaaagtcaa
gcagaaagagactgggtgctctcggagtttaaatctggaaagagtcctataatgacggcg
acagatgttgcagctcgcggattagatgtgaaggatgtaaagtatgtgataaattatgac
ttcccgggatcacttgaggattatgttcatcgcattggtcggactgggagagctggtgca
aaaggaactgcgtacacattcttcacagctgctaatgccagatttgcaaaggaacttata
actatactcgaggaagctggacagagagtgagccctgacttggcagcaatgggacgaggt
gcacctcctccaccctcaggaggattccgagatcgtgggaagggttatggcagtggtcgc
ccatggagctga
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