Lotus japonicus: 130748659
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Entry
130748659 CDS
T04348
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
lja
Lotus japonicus
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130748659
03036 Chromosome and associated proteins [BR:
lja03036
]
130748659
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
130748659
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
130748659
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
Spt6_S1
HHH_9
HTH_44
Tex_central_region
Tex_N
FleQ
Motif
Other DBs
NCBI-GeneID:
130748659
NCBI-ProteinID:
XP_057457879
LinkDB
All DBs
Position
3:complement(12800810..12813424)
Genome browser
AA seq
2049 aa
AA seq
DB search
MVRVRKQSLLDDEEEEIIGRKGKRKVAVTDDDEEDDEGLDDFEIDGFIVDNVEEDKSPKQ
PQKKRKRRRSSKNVVLDDDDLELIRENKSINQEKLRDGKLKRLKKAGKGTELTEHSSDDG
GSLFDDEDESDDAEDDMADFIVDDEVVFYGKGDSLGQSKLKEKKHMSSLSKEAKHSFRKA
VLLEEHIGEVQIPSTESDVPSNMTIDGEGVDNSDIPERMQIIVDIVVSAAIDGMSIEEES
SWMLHQLASNINPLSSEAKSCGLVDTVKREDIDRFLELYHTNKYDIPFIAMYRKEQCLSL
LEDPNRDESDNAVVNDIERKPKLKWHKILWIIKELDKKWLLLQKRKSMLRRYYNKHFEEG
CEMSFAVEESSFRKQICDSITSMLEKAETEREIDDIDMKFNLYFPPAHEFSDSSYKRPLL
KTYFSNCCKAGLWSLASKFGDPEKFGSLLTLKKLGMDVEEDPAESPEEIASIYNCETFQT
SEAVLKGARHMAVVMLSCETTFRKYVRSIFMDKALVSTSPTPEGNLTKDSFHEFSGVKWL
QDKPLSKFEDSQWFFIEKAEQDKLLQVEIKLPDHAVNELTIACNDAYLKENEGISTRLWN
EQRKLILQDAISNFLLPSMEKEARALLNARAKNWLLMKYGMQLWNRVSLAPYPLSDNATV
RPRGVMACCWGNGKPGTAFVMLDSRGEFVDVMHAESLALRSQNINDQQRRKNDQKRVLKF
LSIHQPSVIVLGAANASCIRLREDINEIISMMSEDNLESLSQEMKGLPVVVLGDEGLPRL
YEDSEISIRQVPKKIGIVKRAVALGRYLLNPLAMVATLCGVQKEVLSWKLDPLEKFLTKD
EKLEIIEWVMTDITNQVGIDINLAIKHDWLLAPLQFVSGLGPRKAGILHRELLGGTDVRS
RRDFVKLGLNTKKIFFNAVGFLQISFDDPDFVDSVGSPLDRTRIHPESYSLAEELARAVY
RHDNLESSDANSIQVNAIEYIQNDPKLLESFDVNGYADRLETEKGEYRRVTLFDIKRELL
HGFNDPRRPYMEPTQDEEFYMITGEIGAALVEGKRVQATVRHVQSKQAFCVLDSGITGIL
YKEDFSDESEDIFLTKELHVGDVRTCKIKLIDKNRCQVHLTCKLSEMKNDDGEQGFLDID
PYYCQRSIVLPSQQEATDKKELVNKQFMPRMISHPHFQNITADQAKEFLADKAIGEYIFH
PSLRGPCYLTLSLKIYGGLCAHKDILEGGKSHDIKSLLGLGETLKVGEEIFENIDKVIEH
YVNPMVVHLKAMISFRKFKKGSKAEVDGLLKLEKEEYPNRIPYGLGISYEHPGIFVLSYI
RSTNPHHEFIAIHPKGFKFRKQIFNNVEQLLGYFQSHINDNVARGRNQATADGWKSNNDD
QHKQSRGYNDHGDGHGAGFGRGRGRGGPGRGRGGRGRGFGPRSGSRDDCTGDGGNFGGSK
GDFGSRNGTEDSFAAGNSWGTEQDTNRNNNDNSNWGSGGSKPSEGGGWASGSSSGWKGNV
GKSWGSDDKGGGGDNTNMNNNDNGKWGSGGSNPSGGGGWASGNSSGFKGNAGKSWGGGGD
DKGGGSEQENTNKNNNDNGKWVSGGSNPSGGGGWASGNSSGFKGNAGKSWGGGGDDKGGG
GEQDNTNMNNNDNGKWGSGGSNPSGGGGWASGNSSGWKGNAGKSWGGGGDDKGGGSEQNN
TNRNNNNGKWGSGGSNPPSGGGGWASGNSSGFKGNAGKSWGGGGDDKGGGSEQENTNRNN
NDNGKWGSGGSNPSGGGGWASGNSSGFKGNAGKSWGGDDEGGGSEQDNTNRNNNGKWGSG
GSNPPSGGGGWASGNSSGFKGNAGKSWGGGGDDKGGGGEQDNTNMNNNDNGKWGSGGSNP
SGGGGWASGNSSGWKGNAGKSWGGGGDDKGGGSEQDDTNRNNDNGKWGSGGSNSSGGGGW
ASGNSSGWKSNAGKSWGGGGSGEGNDEGTTKFNGKQAGGSWGDASNDGGLGQQQGGQGRG
RGRGRRGGQGDGGGRGRWGRNSDGFGRHGGDGSNDGGCEGGGRGRGRGWRGSQGDGRGCG
RWGGNGTDE
NT seq
6150 nt
NT seq
+upstream
nt +downstream
nt
atggtgagagtgaggaagcaatcgcttctcgatgatgaagaagaagagattattggaagg
aaagggaagcggaaagttgctgtcactgatgacgacgaggaagacgatgaaggcttggat
gactttgagattgatgggtttatagttgacaatgttgaagaagataaaagtccaaaacaa
ccgcaaaagaagagaaagagaaggagatcatcgaaaaatgttgttcttgacgatgatgat
cttgagttaattcgtgaaaacaagagcatcaatcaggaaaaactgagagatggaaaactc
aagaggcttaaaaaggctggcaaaggcactgagctgacggaacactcttctgatgatgga
ggatcactttttgatgatgaagatgagtctgatgatgcagaagatgacatggcggatttt
atagtggatgatgaggttgttttctatgggaagggagattctctcggacaaagtaaactt
aaagaaaagaaacatatgtcttcactttcaaaagaagccaaacatagttttcgcaaggca
gttctgctggaagagcatatcggggaagttcaaattccgtctactgaatctgatgtacct
agcaatatgaccattgatggagagggtgtagataactcagacatacctgagaggatgcag
ataattgtggacattgtagtatctgctgcaattgacggaatgagtatagaagaagaaagt
tcttggatgctacatcaacttgcatccaatataaatccattgtccagtgaggccaaatcc
tgcggactagttgacacagtaaaaagggaagatattgataggttcttggaattgtatcat
acaaataaatatgatattccatttattgcaatgtaccggaaggaacaatgccttagtctt
ctggaagatccaaatcgggatgaatcagataatgcagtagtgaatgatattgagagaaaa
cctaagcttaaatggcacaagatactgtggataatcaaggaattggataaaaagtggctg
cttcttcagaagcggaagagcatgctccggagatactacaataaacattttgaggaagga
tgcgaaatgtctttcgcagttgaagaatccagtttccgtaagcagatttgtgactccatc
accagtatgctcgaaaaggctgaaacagagagagagattgatgacattgatatgaagttt
aatttatatttcccaccagctcatgagttttctgatagtagttataaaaggcctctgctg
aagacatatttttccaactgctgtaaggcaggactttggtcacttgcaagcaaattcggc
gatcctgagaaatttggttctttacttacacttaagaaattgggaatggatgtggaagag
gatccagcggaatctccagaggagatagcttcaatatataactgtgaaacatttcaaacc
tcagaagctgtccttaaaggcgccaggcacatggctgtagtgatgttaagctgtgagaca
acattcaggaaatatgtccgcagcatatttatggacaaggctttagtttcaactagccct
acaccggaaggaaatttaacaaaagattcctttcatgaattttctggtgttaagtggctg
caggacaaacctctctcgaagtttgaggattcccagtggtttttcattgagaaggctgaa
caagataagcttcttcaagtggaaataaagttgcctgatcatgctgtaaatgagttgaca
attgcatgcaatgatgcttatctgaaagagaatgaaggaatatctactaggctttggaat
gagcagcgtaaattaatactgcaggatgctatttcaaattttctcttgccttctatggag
aaggaagcaagagcattgctaaatgccagggctaaaaactggttattaatgaagtatggg
atgcagttgtggaatagagtctctctggcaccatatccattgagtgacaatgccactgta
cgaccgaggggagtcatggcttgttgttggggaaatggaaagcctggtacagcatttgtc
atgctagactccagaggagaatttgttgatgtgatgcacgccgagtcacttgcactacga
tctcagaatatcaatgatcagcaacggaggaaaaatgatcaaaagcgtgtcctcaaattc
ctatcgattcatcaaccgagcgttattgtactaggagctgctaatgcatcatgtataagg
ttaagagaggacattaatgagattatttccatgatgtccgaggacaatcttgaaagcctc
agtcaagagatgaaaggactaccagttgttgtattaggcgatgaaggcttgcctcgactt
tatgaagattcagaaatttccattagacaagttccaaaaaaaattggcattgtcaagaga
gccgtggctcttggacgttaccttcttaacccgctggcaatggttgcaacactctgtgga
gttcaaaaagaggtgttgtcttggaagttggaccctctggagaaattcctaactaaggat
gagaagttggagattattgaatgggtcatgacagacattacaaatcaagtaggtatcgac
ataaatttggcaattaaacatgactggcttctggctcctttgcagtttgtttctggtctt
ggacctaggaaagctggtattttgcatagagaattacttggaggtacagatgtgagaagt
cgaagggactttgttaaattaggactcaacacaaaaaagattttcttcaatgctgttggc
tttttacagatttcttttgatgacccggattttgttgactctgttggtagtccccttgat
cgtacaagaattcatccagagtcgtatagtcttgctgaggaattagccagagctgtttat
agacatgataatttggaaagttcagatgctaattctatccaagtgaatgcaattgaatat
attcaaaatgatccaaaactgctagagtcttttgatgtaaatggatatgcagatagactg
gaaacagaaaaaggtgaatacagacgggtgactctttttgatataaagagggaactacta
catggatttaatgatcctaggaggccttatatggagcccactcaagatgaggagttctat
atgataactggagaaattggggctgcgctagttgaaggaaaaagagtccaggcaacagtt
cgtcacgtgcagtcaaagcaagcattctgtgtacttgactctggaataacaggaatactt
tataaggaagacttttcagatgaaagtgaggatatatttttgaccaaagaattgcatgta
ggagatgtgcgtacatgcaagatcaaactgattgataagaacagatgccaggtccatctg
acttgtaaattgagtgaaatgaagaatgatgatggtgagcaaggtttccttgacatagat
ccttattattgtcagagaagcatagttttaccgagtcagcaagaggcaacagacaaaaag
gagcttgtaaataaacaattcatgcccaggatgatttctcacccccattttcaaaatata
actgcagatcaagctaaagagttccttgcagataaggccattggggaatatattttccac
ccgagtttaaggggtccatgttatttgaccttatctctgaaaatttatggtggactttgt
gcacataaagacattttggaaggtggaaagagtcatgatataaaaagcttgctcggactt
ggagagacattaaaagttggcgaagaaatatttgagaacatagataaggttatcgaacac
tatgtcaatccaatggtagttcatctgaaagctatgattagcttccgaaaatttaagaag
ggctcaaaagctgaggttgatggattgttaaaacttgagaaggaggaatatccaaacaga
ataccatatgggcttggcatttcatacgagcatcctggtatttttgtattgtcttacata
agaagtacaaatccacatcacgagtttattgctatccatccaaaaggattcaaattcagg
aagcaaatatttaataatgttgagcagctcttgggatattttcaaagtcatatcaatgat
aatgttgcacgaggcagaaaccaggcaacagccgacggatggaaaagcaacaatgatgat
cagcacaagcaatcaagaggttacaatgaccatggggatggtcatggagctggatttggt
cgtggtcgtggacgtggaggccctggacggggccgtgggggtcgtggacgtggattcggt
cctagatctggctctcgtgatgactgcacaggtgatggcggtaattttggtggctcaaag
ggggactttggttccaggaacggcactgaagattcatttgctgctggtaacagttgggga
actgagcaggatacaaacaggaacaacaatgacaatagtaattggggaagtggtggaagt
aaaccctctgagggtggtggttgggcaagtggcagttcatctggttggaaaggtaatgtt
ggtaagagttggggtagtgatgacaaaggaggtggaggtgataatacaaacatgaacaac
aatgacaatggtaaatggggtagtggtggaagtaacccctctgggggtggtggttgggca
agtggcaattcttctggttttaaaggtaatgctggcaaaagttggggtgggggtggtgat
gacaaaggaggtggaagtgagcaagaaaatacgaacaagaacaacaatgacaatggtaaa
tgggtcagcggtggcagtaatccctccgggggtggtggttgggcaagtggcaattcttct
ggttttaaaggtaatgctggcaaaagttggggtgggggtggtgatgacaaaggaggtgga
ggtgagcaagataatacaaacatgaacaacaatgacaatggtaaatggggtagtggtgga
agtaacccctctgggggtggtggttgggcaagtggcaattcttctggttggaaaggtaat
gctggcaagagttggggtgggggtggtgatgacaaaggaggtggaagtgagcaaaataat
acaaacaggaacaacaacaatggtaaatggggcagtggtggaagtaaccctccttctggg
ggtggtggttgggcaagtggcaattcttctggttttaaaggtaatgctggcaagagttgg
ggtgggggtggtgatgacaaaggaggtggaagtgagcaagaaaatacaaacaggaacaac
aatgacaatggtaaatggggcagcggtggcagtaacccctctgggggtggtggttgggca
agtggcaattcttctggttttaaaggtaatgctggcaagagttggggtggtgatgacgaa
ggaggtggaagtgagcaagataatacaaaccggaacaacaatggtaaatggggcagtggt
ggaagtaaccctccttctgggggtggtggctgggcaagtggcaattcttctggttttaaa
ggtaatgctggcaagagttggggtgggggtggtgatgacaaaggaggtggaggtgagcaa
gataatacaaacatgaacaacaatgacaatggtaaatggggtagtggtggaagtaacccc
tctgggggtggtggttgggcaagtggcaattcttctggttggaaaggtaatgctggcaag
agttggggtgggggtggtgatgacaaaggaggtggaagtgagcaagatgatacaaacagg
aacaacgacaatggtaaatggggcagtggtggaagtaactcctctggcggtggtggttgg
gcaagtggcaattcttctggctggaagagtaatgctggcaagagctggggtgggggcggt
tctggtgaaggcaatgatgagggaaccaccaagtttaatgggaagcaagcaggtggtagc
tggggagatgcttcaaatgatggtggcttgggacagcaacagggtggacaaggcagaggg
agaggaagaggaaggagaggaggccaaggtgatggtggaggacgtggtcgttggggcaga
aacagcgatgggtttgggaggcatggaggtgatggctctaatgatggtggttgcgaaggg
ggaggaagaggaagggggagaggatggagaggaagccaaggcgatggccgaggctgtggt
cgatggggtggtaatggtacagatgaataa
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integrated database retrieval system
