Lotus japonicus: 130748787
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Entry
130748787 CDS
T04348
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lja
Lotus japonicus
Pathway
lja03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
130748787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lja03400
]
130748787
Enzymes [BR:
lja01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
130748787
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
130748787
DNA repair and recombination proteins [BR:
lja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
130748787
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-GeneID:
130748787
NCBI-ProteinID:
XP_057458016
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All DBs
Position
3:881173..886738
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AA seq
380 aa
AA seq
DB search
MPELPEVEAARRAVEENCIGKKIIKCIVADDSKVIDAVSPSDFQASVVGKTIVAARRKGK
NMWLQLDSPPFPSFQFGMAGAIYIKGVAVTQYKRSAVNDKDEWPSKYSKFFIELDDGLEL
SFTDKRRFARVRLLKDPTSVPPISELGPDALFEPMTLEEFSKSLHKKKTEIKALLLDQSY
ISGIGNWVADEVLYQARIHPRQVASSLSEENCSTLSKCIREVIEKAVEVGADSSQYPTSW
IFHSREKKPGKAFVDGKEIDFITAGGRTTAYVPELQKLSGSQDVKETAKPKRQTSKKLKG
ADDNNDDIEKPTPGKEENSGTLKSKKGTKTGARGRKPSKRKKSEESEDDNDGDAATDEDD
DMDQAEKKKPDHRGARRKAK
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctaccggaggtggaggcggcgaggagggcggtggaggagaactgtatcggg
aagaagataatcaagtgcatcgtcgccgacgattccaaagtcatcgacgctgtttccccc
tccgatttccaagcttccgtcgtcggaaagaccatcgtcgctgctcgccggaagggcaag
aacatgtggcttcaactcgattcccctccttttccttccttccaattcggcatggctggt
gctatatacataaagggggttgcagtcacacagtataaaaggtctgccgtaaatgataag
gatgaatggccttccaaatattcaaagtttttcattgagttagatgatggtctggagttg
tctttcactgacaaaaggcgatttgctagagttcgactgctcaaagatccaacatcagtg
cctcctatatctgagcttggtcctgatgcactttttgaacccatgacacttgaggagttt
tccaagtccttgcacaagaagaaaactgaaatcaaggctttattacttgatcaaagctat
atttcaggtattggaaattgggtcgcagatgaagtactataccaagcaagaattcatccg
cggcaggtagcttctagcctgtctgaagaaaactgctcaactttgtccaagtgcattaga
gaggtcattgaaaaagcagttgaagttggagcagatagtagtcagtatcccactagttgg
atatttcattcacgtgaaaagaagcccggcaaggcttttgttgatgggaaagaaattgac
ttcatcacagctggtggcaggacaactgcttacgtgccagagttgcaaaagctaagcggg
tcacaagatgtaaaagaaactgctaagcctaaaaggcaaacctcgaagaaattaaaggga
gctgatgataacaatgatgacattgagaaaccgacgcccgggaaagaggagaattcggga
actctcaaatcaaagaaagggacaaagactggagctagaggaaggaagccttccaaaagg
aaaaagtctgaggaaagtgaggatgacaatgatggtgatgctgctactgatgaagatgat
gatatggatcaagctgaaaagaagaaaccagaccataggggtgctagaaggaaagctaag
tag
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